Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0215_RS00040 Genome accession   NZ_CP096210
Coordinates   9353..9928 (+) Length   191 a.a.
NCBI ID   WP_011543464.1    Uniprot ID   A0AAV5PJF2
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain VHProbi R03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4353..14928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0215_RS00025 (M0215_00025) gyrB 4358..6319 (+) 1962 WP_011677861.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M0215_RS00030 (M0215_00030) gyrA 6332..8803 (+) 2472 WP_014564434.1 DNA gyrase subunit A -
  M0215_RS00035 (M0215_00035) rpsF 9019..9312 (+) 294 WP_003612647.1 30S ribosomal protein S6 -
  M0215_RS00040 (M0215_00040) ssb 9353..9928 (+) 576 WP_011543464.1 single-stranded DNA-binding protein Machinery gene
  M0215_RS00045 (M0215_00045) rpsR 9955..10191 (+) 237 WP_003622127.1 30S ribosomal protein S18 -
  M0215_RS00050 (M0215_00050) - 10332..12353 (+) 2022 WP_064081563.1 DHH family phosphoesterase -
  M0215_RS00055 (M0215_00055) rplI 12376..12831 (+) 456 WP_014564436.1 50S ribosomal protein L9 -
  M0215_RS00060 (M0215_00060) dnaB 12855..14225 (+) 1371 WP_003622122.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20582.25 Da        Isoelectric Point: 4.6437

>NTDB_id=680472 M0215_RS00040 WP_011543464.1 9353..9928(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain VHProbi R03]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=680472 M0215_RS00040 WP_011543464.1 9353..9928(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus strain VHProbi R03]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466