Detailed information NTG0068044

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JLF28_RS24395
• Genome accession: NZ_AP022525
• Coordinates: 5001385..5002410 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain THO-003
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4996385..5007410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLF28_RS24375 (THOESC003_47340)	metJ	4997570..4997887 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
JLF28_RS24380 (THOESC003_47350)	yiiX	4997947..4998555 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
JLF28_RS24385 (THOESC003_47360)	rpmE	4998616..4998828 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
JLF28_RS24390 (THOESC003_47370)	priA	4999031..5001229 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
JLF28_RS24395 (THOESC003_47380)	cytR	5001385..5002410 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
JLF28_RS24400 (THOESC003_47390)	ftsN	5002502..5003461 (+)	960	WP_000068834.1	cell division protein FtsN	-
JLF28_RS24405 (THOESC003_47400)	hslV	5003554..5004084 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
JLF28_RS24410 (THOESC003_47410)	hslU	5004094..5005425 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
JLF28_RS24415 (THOESC003_47420)	menA	5005492..5006418 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JLF28_RS24420 (THOESC003_47430)	rraA	5006511..5006996 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
JLF28_RS24425 (THOESC003_47440)	zapB	5007081..5007326 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=68044 JLF28_RS24395 WP_000644908.1 5001385..5002410(+) (cytR) [Escherichia coli strain THO-003]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=68044 JLF28_RS24395 WP_000644908.1 5001385..5002410(+) (cytR) [Escherichia coli strain THO-003]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625