Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M0D10_RS31935 Genome accession   NZ_CP096207
Coordinates   6806154..6806711 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa TBCF10839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6801154..6811711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D10_RS31920 (M0D10_31855) pilY1 6801246..6804737 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  M0D10_RS31925 (M0D10_31860) pilX 6804749..6805336 (-) 588 WP_034037187.1 type 4a pilus minor pilin PilX -
  M0D10_RS31930 (M0D10_31865) pilW 6805333..6806157 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  M0D10_RS31935 (M0D10_31870) pilV 6806154..6806711 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  M0D10_RS31940 (M0D10_31875) - 6806702..6807208 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  M0D10_RS31945 (M0D10_31880) - 6807314..6807823 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  M0D10_RS31950 (M0D10_31885) thiO 6807958..6809052 (+) 1095 WP_023084775.1 glycine oxidase ThiO -
  M0D10_RS31955 (M0D10_31890) pilR 6809098..6810435 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=680397 M0D10_RS31935 WP_003119423.1 6806154..6806711(-) (pilV) [Pseudomonas aeruginosa TBCF10839]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=680397 M0D10_RS31935 WP_003119423.1 6806154..6806711(-) (pilV) [Pseudomonas aeruginosa TBCF10839]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995