Detailed information NTG0680343

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: M0R79_RS00040
• Genome accession: NZ_CP096206
• Coordinates: 9241..9762 (+)
• Length: 173 a.a.
• NCBI ID: WP_248416952.1
• Uniprot ID: -
• Organism: Ignavigranum ruoffiae strain CPL 242382-20
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	79..18167	9241..9762	within	0

Gene organization within MGE regions

Location: 79..18167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0R79_RS00005 (M0R79_03125)	dnaA	79..1410 (+)	1332	WP_092570977.1	chromosomal replication initiator protein DnaA	-
M0R79_RS00010 (M0R79_03120)	dnaN	1572..2729 (+)	1158	WP_248416956.1	DNA polymerase III subunit beta	-
M0R79_RS00015 (M0R79_03115)	yaaA	2893..3126 (+)	234	WP_092570981.1	S4 domain-containing protein YaaA	-
M0R79_RS00020 (M0R79_03110)	recF	3123..4250 (+)	1128	WP_259560622.1	DNA replication/repair protein RecF	-
M0R79_RS00025 (M0R79_03105)	gyrB	4268..6190 (+)	1923	WP_248416954.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
M0R79_RS00030 (M0R79_03100)	gyrA	6217..8742 (+)	2526	WP_248416953.1	DNA gyrase subunit A	-
M0R79_RS00035 (M0R79_03095)	rpsF	8904..9203 (+)	300	WP_092570987.1	30S ribosomal protein S6	-
M0R79_RS00040 (M0R79_03090)	ssb	9241..9762 (+)	522	WP_248416952.1	single-stranded DNA-binding protein	Machinery gene
M0R79_RS00045 (M0R79_03085)	rpsR	9795..10028 (+)	234	WP_092570991.1	30S ribosomal protein S18	-
M0R79_RS00050 (M0R79_03080)	-	10139..12145 (+)	2007	WP_248416951.1	DHH family phosphoesterase	-
M0R79_RS00055 (M0R79_03075)	rplI	12148..12600 (+)	453	WP_248416950.1	50S ribosomal protein L9	-
M0R79_RS00060 (M0R79_03070)	dnaB	12637..14010 (+)	1374	WP_375163560.1	replicative DNA helicase	-
M0R79_RS00065 (M0R79_03065)	-	14118..15014 (-)	897	WP_248416949.1	cation diffusion facilitator family transporter	-
M0R79_RS00070 (M0R79_03060)	-	15034..15873 (-)	840	WP_259560629.1	C39 family peptidase	-
M0R79_RS00075 (M0R79_03055)	glnA	16148..17488 (+)	1341	WP_248416947.1	type I glutamate--ammonia ligase	-
M0R79_RS00080 (M0R79_03050)	-	17631..18167 (+)	537	WP_375163561.1	dUTP diphosphatase	-

Sequence

Protein

• Length: 173 a.a.
• Molecular weight: 19702.48 Da
• Isoelectric Point: 4.9844

>NTDB_id=680343 M0R79_RS00040 WP_248416952.1 9241..9762(+) (ssb) [Ignavigranum ruoffiae strain CPL 242382-20]
MNTVQLVGRLTREVDLKFTSSGVAVGTFTLAVNRSFTNQQGEREADFINCVIWRKAAENLANFTRKGSQIGVEGRIQTRN
YENQQGQRVYVTEVVVNNFHLLEPRSVTEQRPVSNNSNNSYSSPTFDNTNQYNNNKSSFDNKSFNNNFDNQFSQSPFVED
GRPIEISEDDLPF

Nucleotide

• Length: 522 bp

>NTDB_id=680343 M0R79_RS00040 WP_248416952.1 9241..9762(+) (ssb) [Ignavigranum ruoffiae strain CPL 242382-20]
ATGAACACTGTTCAATTAGTGGGACGGCTGACTAGAGAAGTAGATTTAAAATTCACTTCTTCTGGAGTAGCGGTAGGAAC
ATTTACTTTAGCGGTTAATCGTAGTTTTACTAATCAACAAGGTGAACGTGAGGCAGATTTTATTAATTGTGTTATTTGGC
GGAAAGCAGCTGAAAACTTAGCTAATTTTACCCGTAAAGGATCTCAAATTGGAGTTGAAGGACGGATTCAAACCCGTAAT
TATGAGAATCAACAAGGTCAACGTGTGTATGTTACCGAAGTGGTTGTGAATAACTTCCATCTCTTAGAGCCTCGATCAGT
TACAGAACAAAGACCTGTATCTAATAATTCAAACAACTCTTATTCTAGTCCGACATTTGATAACACAAATCAATATAACA
ATAATAAGTCATCATTCGATAACAAATCGTTTAACAATAATTTTGACAATCAGTTTTCTCAAAGTCCATTCGTGGAAGAT
GGACGTCCAATTGAAATATCAGAAGACGACCTTCCCTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	60.227	100	0.613
ssbA	Bacillus subtilis subsp. subtilis str. 168	53.179	100	0.532