Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   MTO69_RS14485 Genome accession   NZ_CP096200
Coordinates   191483..193540 (-) Length   685 a.a.
NCBI ID   WP_248335111.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 186483..198540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS14470 (MTO69_14470) clcA 187527..188927 (+) 1401 WP_248335108.1 H(+)/Cl(-) exchange transporter ClcA -
  MTO69_RS14475 (MTO69_14475) - 189056..190027 (+) 972 WP_248335109.1 TDT family transporter -
  MTO69_RS14480 (MTO69_14480) cqsA 190228..191409 (+) 1182 WP_248335110.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MTO69_RS14485 (MTO69_14485) cqsS 191483..193540 (-) 2058 WP_248335111.1 hybrid sensor histidine kinase/response regulator Regulator
  MTO69_RS14490 (MTO69_14490) - 193656..196697 (-) 3042 WP_248335112.1 SMC family ATPase -
  MTO69_RS14495 (MTO69_14495) - 196707..197837 (-) 1131 WP_248335113.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78366.67 Da        Isoelectric Point: 4.9804

>NTDB_id=680274 MTO69_RS14485 WP_248335111.1 191483..193540(-) (cqsS) [Vibrio sinaloensis strain YA2]
MDAILDSIRKVYQYAEPNLTLVGWMGLIGFPMYYYIWSELFPQPYESLTLRLACSLLFAGIALRHYLPKYLQQYLAEYYF
VSIGICLPFFFSFMMFKNEWSTIWAMSFMASIFLHVLLVHQTRLMLSQTAVAVGVAYLAVYGFDITQVQQQVVWPYIPIF
LFTYVFGNLFYFRNQAEHESKISLAKSFGAGIAHEMRNPLSALKSSLDVLESILPKAGVGGGRHYRLTEQEVAIAREILS
DADEVIRTGNETIDLLLTSIDENRVSRNTFKKHSIRQVVEDSLQSFAYKSDKDKQAVTLLPGDNFEFFGSDALIKYALYN
LLKNAFYYQNTNQIEITVELRSFEYHNELVFTDNGVGIEPDVIEDVFKDFYTFGKTGSYGLGLPFCRKVMVALGGQIHCR
STLGEWTEFTLSFPKYRSEEVAVIKSDIMKSKSVLYVGGQSKPFRLVNEEAFYRGFNLRQLSLEAARNKQEYEFEYDLII
IDLDEALSNPDALHELESKLHFTEGRIVFLFNEQNRYHNDVERHLTIYPVEVHNFLLKSGEILDELLFEAPSTNRNLLPR
KPVVQGKTILLADDNHSLRTYTSILLEQQGFEVLQAKNGQEAVDQVEQHSVDLIIMDLEMPQVDGLAATLKIRQSLSANN
QVPILAHTGDSSDTVLEKIQQVGMNDYIVKPADTDLLLDKIANWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=680274 MTO69_RS14485 WP_248335111.1 191483..193540(-) (cqsS) [Vibrio sinaloensis strain YA2]
ATGGACGCAATTCTCGACTCGATTCGTAAGGTTTATCAATACGCAGAGCCTAACCTAACTTTAGTTGGGTGGATGGGATT
GATTGGCTTTCCGATGTACTACTACATTTGGAGTGAACTGTTCCCGCAACCGTATGAAAGCCTAACCCTTAGGTTAGCGT
GCTCACTATTGTTTGCGGGAATCGCTCTGCGCCATTATTTACCCAAATATTTGCAACAATACCTAGCCGAGTATTATTTT
GTCTCGATAGGGATATGCTTGCCGTTCTTCTTCAGTTTCATGATGTTCAAGAACGAGTGGTCGACAATTTGGGCGATGTC
ATTTATGGCTTCGATCTTTTTGCATGTACTACTGGTGCATCAGACGCGCTTAATGTTGTCGCAAACTGCGGTAGCGGTCG
GGGTCGCTTATTTAGCCGTCTATGGCTTTGATATCACACAGGTACAGCAGCAAGTTGTCTGGCCTTACATCCCGATCTTC
TTGTTTACTTATGTGTTCGGCAATCTGTTCTACTTTCGCAATCAGGCCGAACATGAAAGTAAAATCTCGTTGGCCAAATC
GTTTGGCGCTGGGATAGCCCACGAAATGCGCAATCCACTGAGTGCGCTTAAGTCGTCGCTGGATGTATTGGAATCTATTT
TGCCGAAAGCAGGAGTCGGTGGCGGTCGTCATTATCGTCTTACTGAGCAAGAAGTCGCGATAGCGCGGGAAATTCTTTCA
GACGCAGATGAAGTGATTCGTACCGGTAATGAAACGATTGACTTGTTACTGACCTCAATCGATGAAAACCGAGTGTCAAG
GAACACCTTTAAAAAGCACTCCATTCGTCAAGTTGTTGAAGATTCCTTGCAGAGCTTTGCGTACAAAAGCGACAAAGATA
AACAGGCTGTTACCTTGCTCCCCGGTGATAATTTCGAGTTTTTTGGTAGTGATGCGCTGATAAAATACGCCTTATACAAC
CTGCTCAAGAACGCTTTTTATTATCAGAATACCAACCAAATTGAGATTACCGTAGAGCTCAGGAGTTTTGAGTATCATAA
CGAGCTGGTATTCACTGACAATGGTGTCGGAATTGAACCCGATGTGATTGAAGATGTGTTTAAAGACTTCTATACCTTCG
GTAAAACCGGCAGTTACGGACTGGGGTTACCGTTTTGTCGCAAAGTGATGGTGGCATTGGGGGGGCAGATACACTGTCGC
TCGACTCTGGGTGAATGGACCGAGTTTACCCTTAGTTTTCCTAAATATCGCTCTGAAGAAGTCGCGGTCATTAAGTCCGA
TATTATGAAGTCTAAATCGGTGCTATACGTAGGGGGGCAGAGTAAGCCATTTCGCCTGGTTAACGAAGAGGCTTTTTATC
GAGGTTTCAATTTGCGTCAGTTGTCATTAGAGGCGGCGCGCAATAAGCAAGAGTACGAATTTGAGTATGACCTAATCATC
ATCGACCTTGATGAGGCGTTATCCAATCCCGATGCACTGCATGAACTAGAAAGTAAACTTCATTTTACCGAAGGGCGCAT
TGTGTTCCTGTTCAATGAACAAAACCGTTATCACAATGATGTTGAACGTCACCTGACAATTTATCCGGTTGAAGTGCACA
ACTTCTTGCTTAAGTCGGGGGAAATTTTGGATGAACTGCTGTTTGAAGCGCCGAGTACCAACCGAAATTTGCTACCGAGA
AAACCGGTGGTCCAAGGTAAAACCATCTTGTTAGCGGATGATAATCACTCGCTGAGAACCTACACCTCGATACTGCTTGA
GCAGCAAGGTTTTGAGGTGTTGCAAGCCAAAAACGGTCAGGAAGCCGTTGACCAAGTAGAGCAACATAGTGTCGATTTGA
TCATCATGGACTTAGAGATGCCCCAAGTTGACGGTTTAGCCGCGACGCTGAAAATTCGCCAATCCTTGTCAGCGAACAAT
CAGGTACCGATTTTGGCCCATACTGGCGATTCGAGTGACACGGTGTTGGAAAAGATTCAACAAGTCGGGATGAACGACTA
CATAGTAAAGCCAGCAGACACGGATTTGCTGCTCGATAAGATAGCCAACTGGATATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(569-681)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.269

99.708

0.521