Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   MTO69_RS14480 Genome accession   NZ_CP096200
Coordinates   190228..191409 (+) Length   393 a.a.
NCBI ID   WP_248335110.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 185228..196409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS14465 (MTO69_14465) - 186133..187107 (+) 975 WP_248335107.1 GTP-binding protein -
  MTO69_RS14470 (MTO69_14470) clcA 187527..188927 (+) 1401 WP_248335108.1 H(+)/Cl(-) exchange transporter ClcA -
  MTO69_RS14475 (MTO69_14475) - 189056..190027 (+) 972 WP_248335109.1 TDT family transporter -
  MTO69_RS14480 (MTO69_14480) cqsA 190228..191409 (+) 1182 WP_248335110.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MTO69_RS14485 (MTO69_14485) cqsS 191483..193540 (-) 2058 WP_248335111.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43767.82 Da        Isoelectric Point: 7.0834

>NTDB_id=680273 MTO69_RS14480 WP_248335110.1 190228..191409(+) (cqsA) [Vibrio sinaloensis strain YA2]
MNKLNNYSTLPGFINEKLNGYLNDLIYSNNNKHHLVMGALPGEHDLILQSNDYLDLANNQTIINHHINAIRSRKNSPFMS
GIFLQNEQSKPKVEQKLAHYTGFKSCLLSQSGWAANMALLQTICDTSTQVYVDFFAHMSLWQGATVAGSDVHPFMHNNVK
HLEKLIKRHGPGVVLIDSIYSTIGTVAPIAEIIAVAKENGCAIVVDESHSLGTHGQKGRGLLHELNLSHLVDFMTASLAK
TFAYRAGAIWCNNQADQCIPFVAYPAIFSSAMLPHELDRLDKTLEVIKQSDDKRQRLADISRYIKSELVSSGITVRSDSQ
IIALETGDERNTENVRDYLEASGIFGAVFCRPATTRNKNIIRFSINSAMQDSEIEKLISVCRSAQHQPDLYIL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=680273 MTO69_RS14480 WP_248335110.1 190228..191409(+) (cqsA) [Vibrio sinaloensis strain YA2]
ATGAATAAACTCAATAATTATTCAACCCTACCCGGCTTTATTAACGAAAAGTTAAACGGCTATCTAAATGATTTAATTTA
TTCCAATAATAATAAGCATCATTTAGTGATGGGCGCCCTGCCAGGTGAACATGATCTTATACTGCAAAGTAACGACTACT
TAGATTTAGCCAATAACCAAACCATTATAAATCACCACATCAATGCAATTCGTTCGAGAAAAAATAGCCCATTTATGTCG
GGCATTTTTTTGCAGAACGAACAATCCAAACCTAAGGTTGAGCAGAAACTCGCTCACTACACAGGGTTCAAGTCTTGTTT
ATTATCTCAATCGGGTTGGGCAGCCAATATGGCTTTGTTGCAAACCATTTGCGACACTAGTACTCAGGTCTACGTTGACT
TTTTCGCTCATATGTCTTTATGGCAAGGAGCAACAGTAGCAGGTTCAGACGTACACCCGTTTATGCACAACAATGTTAAG
CATCTGGAAAAGTTGATTAAACGTCATGGACCTGGGGTGGTATTGATTGACTCGATATATAGCACGATTGGCACCGTTGC
TCCAATTGCTGAGATCATTGCCGTCGCCAAAGAGAACGGCTGTGCGATCGTGGTCGATGAATCACACTCACTTGGCACGC
ACGGTCAAAAGGGTCGTGGCTTGCTGCACGAGCTTAATCTGAGCCATCTTGTCGACTTTATGACCGCGAGTTTAGCCAAA
ACGTTTGCTTATCGCGCTGGCGCCATATGGTGCAATAACCAAGCGGACCAATGTATCCCTTTTGTCGCGTATCCTGCCAT
ATTCAGCTCAGCCATGCTGCCCCATGAACTCGACAGGCTCGATAAAACATTGGAGGTCATAAAACAGTCGGATGATAAAA
GACAACGCTTAGCCGATATCAGTCGTTATATTAAATCTGAATTAGTCAGCAGTGGAATTACCGTACGTAGTGATTCACAA
ATAATCGCTTTAGAAACAGGTGATGAGCGAAATACCGAAAATGTTAGGGACTATTTAGAAGCAAGCGGTATATTTGGTGC
GGTATTTTGTCGCCCTGCAACCACTCGTAATAAGAACATCATCCGGTTTTCAATTAATAGCGCTATGCAAGATAGTGAAA
TTGAGAAATTAATTTCGGTGTGCCGCAGCGCGCAACATCAACCAGACTTATATATTCTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

98.473

0.565