Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   MTO69_RS11390 Genome accession   NZ_CP096199
Coordinates   2534583..2535206 (+) Length   207 a.a.
NCBI ID   WP_248329337.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2529583..2540206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS11370 (MTO69_11370) - 2529835..2530752 (-) 918 WP_248329331.1 ABC transporter ATP-binding protein -
  MTO69_RS11375 (MTO69_11375) - 2530919..2532589 (-) 1671 WP_248334467.1 SulP family inorganic anion transporter -
  MTO69_RS11380 (MTO69_11380) can 2532998..2533666 (+) 669 WP_248329333.1 carbonate dehydratase -
  MTO69_RS11385 (MTO69_11385) hpt 2533740..2534270 (-) 531 WP_248329335.1 hypoxanthine phosphoribosyltransferase -
  MTO69_RS11390 (MTO69_11390) opaR 2534583..2535206 (+) 624 WP_248329337.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  MTO69_RS11395 (MTO69_11395) lpdA 2535304..2536731 (-) 1428 WP_248329339.1 dihydrolipoyl dehydrogenase -
  MTO69_RS11400 (MTO69_11400) aceF 2536999..2538921 (-) 1923 WP_248329341.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23923.27 Da        Isoelectric Point: 6.1444

>NTDB_id=680261 MTO69_RS11390 WP_248329337.1 2534583..2535206(+) (opaR) [Vibrio sinaloensis strain YA2]
MDSIAKRPRTRLSPQKRKQQLMDISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNYVVRQFSNFLS
DTIDLDLHAKQNLSNLTSAMVELVLNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFAKAMERGEVCDQHDPA
ELATLFHGIFYSLFIQATRTQDEAMMERLTANHLDMLCIYKHAKNNE

Nucleotide


Download         Length: 624 bp        

>NTDB_id=680261 MTO69_RS11390 WP_248329337.1 2534583..2535206(+) (opaR) [Vibrio sinaloensis strain YA2]
ATGGACTCTATAGCGAAAAGACCGCGCACGCGTCTATCTCCTCAAAAGCGTAAACAGCAGCTAATGGACATCTCCCTTGA
GGTGTTCGCACGTCGCGGTATCGGCCGTGGCGGTCACGCTGATATTGCAGAGATTGCACAAGTCTCTGTTGCCACCGTGT
TCAACTACTTCCCGACACGTGAAGACTTAGTCGATGAAGTGCTCAACTACGTGGTGCGTCAGTTCTCAAACTTTCTCTCT
GACACGATCGATTTGGATCTGCACGCTAAACAGAACCTCAGCAACCTAACATCCGCTATGGTTGAGTTGGTGCTGAATGA
CTGTCACTGGCTGAAAGTCTGGTTCGAATGGAGCGCATCAACCCGTGATGAAGTATGGCCGCTGTTCGTATCGACCAACC
GCACAAACCAGCTATTAGTGCAAAACATGTTCGCCAAAGCGATGGAACGTGGTGAGGTATGCGATCAACACGATCCAGCA
GAGCTGGCAACCCTGTTCCACGGTATTTTCTATTCATTGTTCATTCAAGCGACTCGTACTCAAGATGAAGCGATGATGGA
AAGACTCACTGCCAACCATCTGGACATGCTGTGCATCTACAAACACGCGAAAAATAACGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

96.618

0.797
  hapR Vibrio cholerae C6706

74

96.618

0.715
  hapR Vibrio cholerae strain A1552

74

96.618

0.715