Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PALA26_RS12700 Genome accession   NZ_CP109835
Coordinates   2679163..2679807 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain PALA26     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2674163..2684807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA26_RS12685 (PALA26_02521) - 2674797..2676011 (+) 1215 WP_003130955.1 MFS transporter -
  PALA26_RS12690 (PALA26_02522) - 2676027..2677055 (-) 1029 WP_003138966.1 AraC family transcriptional regulator -
  PALA26_RS12695 (PALA26_02523) pqsH 2677673..2678821 (+) 1149 WP_003119987.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PALA26_RS12700 (PALA26_02524) letA 2679163..2679807 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PALA26_RS12705 (PALA26_02525) uvrC 2679808..2681634 (+) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  PALA26_RS12710 (PALA26_02526) pgsA 2681668..2682228 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PALA26_RS12720 (PALA26_02529) - 2683111..2684166 (-) 1056 WP_003138967.1 fimbrial protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=680129 PALA26_RS12700 WP_003090351.1 2679163..2679807(+) (letA) [Pseudomonas aeruginosa strain PALA26]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=680129 PALA26_RS12700 WP_003090351.1 2679163..2679807(+) (letA) [Pseudomonas aeruginosa strain PALA26]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCTATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537