Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH129_RS03670 Genome accession   NZ_CP109819
Coordinates   724649..725197 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain CC21NB04a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 719649..730197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS03640 (OH129_03640) ctsT 719692..719997 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  OH129_RS03645 (OH129_03645) proC 719994..720731 (-) 738 WP_072235236.1 pyrroline-5-carboxylate reductase Machinery gene
  OH129_RS03650 (OH129_03650) fliW 720731..721120 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  OH129_RS03655 (OH129_03655) - 721284..721931 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  OH129_RS03660 (OH129_03660) lon 721947..724322 (+) 2376 WP_002783351.1 endopeptidase La -
  OH129_RS03665 (OH129_03665) rpsR 724378..724638 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  OH129_RS03670 (OH129_03670) ssb 724649..725197 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  OH129_RS03675 (OH129_03675) rpsF 725206..725583 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  OH129_RS03680 (OH129_03680) - 725862..727133 (+) 1272 WP_002777080.1 MFS transporter -
  OH129_RS03685 (OH129_03685) - 727133..728134 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  OH129_RS03690 (OH129_03690) - 728127..728767 (-) 641 Protein_722 DUF535 family protein -
  OH129_RS09715 - 728731..728982 (-) 252 WP_048813181.1 hypothetical protein -
  OH129_RS03695 (OH129_03695) rseP 728979..730082 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=679866 OH129_RS03670 WP_002777084.1 724649..725197(-) (ssb) [Campylobacter coli strain CC21NB04a]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=679866 OH129_RS03670 WP_002777084.1 724649..725197(-) (ssb) [Campylobacter coli strain CC21NB04a]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379