Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   OH129_RS03640 Genome accession   NZ_CP109819
Coordinates   719692..719997 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain CC21NB04a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 714692..724997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS03605 (OH129_03605) - 715107..715868 (+) 762 WP_025431509.1 ATP-binding protein -
  OH129_RS03610 (OH129_03610) - 715865..716548 (+) 684 WP_264378566.1 3-methyladenine DNA glycosylase -
  OH129_RS03615 (OH129_03615) thiD 716548..717360 (+) 813 WP_002822374.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OH129_RS03620 (OH129_03620) thiE 717350..717982 (+) 633 WP_002783359.1 thiamine phosphate synthase -
  OH129_RS03625 (OH129_03625) - 717960..718589 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  OH129_RS03630 (OH129_03630) - 718582..719034 (-) 453 WP_002777117.1 hypothetical protein -
  OH129_RS03635 (OH129_03635) - 719031..719699 (-) 669 WP_002790524.1 hypothetical protein -
  OH129_RS03640 (OH129_03640) ctsT 719692..719997 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  OH129_RS03645 (OH129_03645) proC 719994..720731 (-) 738 WP_072235236.1 pyrroline-5-carboxylate reductase Machinery gene
  OH129_RS03650 (OH129_03650) fliW 720731..721120 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  OH129_RS03655 (OH129_03655) - 721284..721931 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  OH129_RS03660 (OH129_03660) lon 721947..724322 (+) 2376 WP_002783351.1 endopeptidase La -
  OH129_RS03665 (OH129_03665) rpsR 724378..724638 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=679864 OH129_RS03640 WP_002790525.1 719692..719997(-) (ctsT) [Campylobacter coli strain CC21NB04a]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=679864 OH129_RS03640 WP_002790525.1 719692..719997(-) (ctsT) [Campylobacter coli strain CC21NB04a]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475