Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OH130_RS03660 Genome accession   NZ_CP109817
Coordinates   724523..725071 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain CC21NB01a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 719523..730071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH130_RS03630 (OH130_03630) ctsT 719566..719871 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  OH130_RS03635 (OH130_03635) proC 719868..720605 (-) 738 WP_072235236.1 pyrroline-5-carboxylate reductase Machinery gene
  OH130_RS03640 (OH130_03640) fliW 720605..720994 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  OH130_RS03645 (OH130_03645) - 721158..721805 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  OH130_RS03650 (OH130_03650) lon 721821..724196 (+) 2376 WP_002783351.1 endopeptidase La -
  OH130_RS03655 (OH130_03655) rpsR 724252..724512 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  OH130_RS03660 (OH130_03660) ssb 724523..725071 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  OH130_RS03665 (OH130_03665) rpsF 725080..725457 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  OH130_RS03670 (OH130_03670) - 725736..727007 (+) 1272 WP_002777080.1 MFS transporter -
  OH130_RS03675 (OH130_03675) - 727007..728008 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  OH130_RS03680 (OH130_03680) - 728001..728641 (-) 641 Protein_720 DUF535 family protein -
  OH130_RS09705 - 728605..728856 (-) 252 WP_048813181.1 hypothetical protein -
  OH130_RS03685 (OH130_03685) rseP 728853..729956 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=679818 OH130_RS03660 WP_002777084.1 724523..725071(-) (ssb) [Campylobacter coli strain CC21NB01a]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=679818 OH130_RS03660 WP_002777084.1 724523..725071(-) (ssb) [Campylobacter coli strain CC21NB01a]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379