Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MZN51_RS12520 Genome accession   NZ_CP096151
Coordinates   2478743..2480116 (+) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes strain FSL W1-0110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2473743..2485116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN51_RS12500 (MZN51_12500) - 2474097..2474555 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  MZN51_RS12505 (MZN51_12505) - 2474568..2475086 (+) 519 WP_070039903.1 UvrB/UvrC motif-containing protein -
  MZN51_RS12510 (MZN51_12510) - 2475083..2476105 (+) 1023 WP_003735362.1 protein arginine kinase -
  MZN51_RS12515 (MZN51_12515) - 2476134..2478596 (+) 2463 WP_003735363.1 ATP-dependent Clp protease ATP-binding subunit -
  MZN51_RS12520 (MZN51_12520) radA 2478743..2480116 (+) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  MZN51_RS12525 (MZN51_12525) - 2480250..2481323 (+) 1074 WP_069009920.1 PIN/TRAM domain-containing protein -
  MZN51_RS12530 (MZN51_12530) ispD 2481343..2482041 (+) 699 WP_012582075.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MZN51_RS12535 (MZN51_12535) ispF 2482034..2482507 (+) 474 WP_003740385.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MZN51_RS12540 (MZN51_12540) gltX 2482526..2484001 (+) 1476 WP_003729193.1 glutamate--tRNA ligase -
  MZN51_RS12545 (MZN51_12545) epsC 2484401..2485015 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=679816 MZN51_RS12520 WP_003729197.1 2478743..2480116(+) (radA) [Listeria monocytogenes strain FSL W1-0110]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=679816 MZN51_RS12520 WP_003729197.1 2478743..2480116(+) (radA) [Listeria monocytogenes strain FSL W1-0110]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACGGGAG
AGCCTTCGAAAGCGACTCCGATTACTCAAATAGAAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGAGTTCTTGGTGGAGGCGTGGTTCCAGGATCTATGGTACTTGTCGGTGGGGACCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAAGTATTGTATATCTCAGGAGAAGAATCTATCAAACAAACGA
AGCTACGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCTATTCAGACGGTTTATCATCCGGATGTTACGAGTGCAGC
AGGTAGTGTTTCGCAAGTTAGGGAATGTACAGCGGCATTGATGCGAATTGCTAAAATGCAAAACATTGCAATCTTTATTG
TTGGGCATGTAACGAAGGAAGGTGCTATTGCGGGACCGCGCCTGCTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTAGTTGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGGACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCCGTTTTAGAAAAAAGAGTAGGTTT
GATGCTACAAAACCAAGACGCTTACTTGAAAGCAGCGGGCGGGGTTAAGCTAGATGAACCTGCAGTGGATTTGGCGGTTG
CAGTGAGTGTGGCATCTAGTTATCGTGATAAACCAACGAGAAGTACAGATTGCTTTATCGGAGAACTTGGACTTACGGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTGCAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCGAA
AAACAATGAAGGTACTTGGAAAATACCAAAAGATGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643