Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   OH128_RS05845 Genome accession   NZ_CP109813
Coordinates   1155293..1155673 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain CC20JX12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1150293..1160673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH128_RS05820 (OH128_05820) aspS 1150806..1152557 (+) 1752 WP_264378289.1 aspartate--tRNA ligase -
  OH128_RS05825 (OH128_05825) - 1152554..1153129 (+) 576 WP_002781658.1 adenylate kinase -
  OH128_RS05830 (OH128_05830) ppa 1153139..1153657 (+) 519 WP_002776378.1 inorganic diphosphatase -
  OH128_RS05835 (OH128_05835) msrA 1153705..1154205 (+) 501 WP_264378290.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OH128_RS05840 (OH128_05840) - 1154428..1155282 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OH128_RS05845 (OH128_05845) dprB 1155293..1155673 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  OH128_RS05850 (OH128_05850) dprA 1155670..1156440 (-) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  OH128_RS05855 (OH128_05855) - 1156430..1157461 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  OH128_RS05860 (OH128_05860) ilvC 1157464..1158486 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  OH128_RS05865 (OH128_05865) - 1158609..1160543 (+) 1935 WP_264378291.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=679779 OH128_RS05845 WP_002776373.1 1155293..1155673(-) (dprB) [Campylobacter coli strain CC20JX12]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=679779 OH128_RS05845 WP_002776373.1 1155293..1155673(-) (dprB) [Campylobacter coli strain CC20JX12]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGTGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421