Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OH128_RS05850 Genome accession   NZ_CP109813
Coordinates   1155670..1156440 (-) Length   256 a.a.
NCBI ID   WP_002818781.1    Uniprot ID   -
Organism   Campylobacter coli strain CC20JX12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1150670..1161440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH128_RS05820 (OH128_05820) aspS 1150806..1152557 (+) 1752 WP_264378289.1 aspartate--tRNA ligase -
  OH128_RS05825 (OH128_05825) - 1152554..1153129 (+) 576 WP_002781658.1 adenylate kinase -
  OH128_RS05830 (OH128_05830) ppa 1153139..1153657 (+) 519 WP_002776378.1 inorganic diphosphatase -
  OH128_RS05835 (OH128_05835) msrA 1153705..1154205 (+) 501 WP_264378290.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OH128_RS05840 (OH128_05840) - 1154428..1155282 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OH128_RS05845 (OH128_05845) dprB 1155293..1155673 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  OH128_RS05850 (OH128_05850) dprA 1155670..1156440 (-) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  OH128_RS05855 (OH128_05855) - 1156430..1157461 (-) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  OH128_RS05860 (OH128_05860) ilvC 1157464..1158486 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  OH128_RS05865 (OH128_05865) - 1158609..1160543 (+) 1935 WP_264378291.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=679780 OH128_RS05850 WP_002818781.1 1155670..1156440(-) (dprA) [Campylobacter coli strain CC20JX12]
MQSEIPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=679780 OH128_RS05850 WP_002818781.1 1155670..1156440(-) (dprA) [Campylobacter coli strain CC20JX12]
ATGCAAAGTGAAATACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATTAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAGGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.581

96.875

0.461