Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OBG92_RS27720 Genome accession   NZ_CP109657
Coordinates   5888081..5888677 (-) Length   198 a.a.
NCBI ID   WP_003148777.1    Uniprot ID   A0A2R3J064
Organism   Pseudomonas aeruginosa strain Zw26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5883081..5893677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS27700 (OBG92_05454) aroK 5884212..5884730 (-) 519 WP_003148769.1 shikimate kinase AroK -
  OBG92_RS27705 (OBG92_05455) pilQ 5884742..5886886 (-) 2145 WP_264315654.1 type 4a pilus secretin PilQ Machinery gene
  OBG92_RS27710 (OBG92_05456) comL/pilP 5886940..5887464 (-) 525 WP_034082521.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OBG92_RS27715 (OBG92_05457) pilO 5887461..5888084 (-) 624 WP_003148775.1 type 4a pilus biogenesis protein PilO Machinery gene
  OBG92_RS27720 (OBG92_05458) pilN 5888081..5888677 (-) 597 WP_003148777.1 type 4a pilus biogenesis protein PilN Machinery gene
  OBG92_RS27725 (OBG92_05459) pilM 5888677..5889741 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OBG92_RS27730 (OBG92_05460) - 5889926..5892397 (+) 2472 WP_012077723.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22217.54 Da        Isoelectric Point: 10.3054

>NTDB_id=679725 OBG92_RS27720 WP_003148777.1 5888081..5888677(-) (pilN) [Pseudomonas aeruginosa strain Zw26]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGRNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEQDAKAKNGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=679725 OBG92_RS27720 WP_003148777.1 5888081..5888677(-) (pilN) [Pseudomonas aeruginosa strain Zw26]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATCCTCGGTGG
CGTGCTGGTGGCCTCGGCGGCCCTGGTGTTCCTCGGCGACCAGTACTTCACCGCCGCCATCGAGAACCAGAATGCGCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTGCTGGACGCGCGGATCAAGGAGATCAGCGAGCTGAAATCGCGCCGCCAGCAG
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGCCCGATCATCGGCCGGGTGTTCGACCAGCTCGTGCG
CACGCTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAGGAATATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGTGTCTCCAACCTGATGCGCAACATGGACGCGTCCGAATGGCTGACCGCGCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGGGCGGTGGACCAGGCCAACGTGTTCCAGTTGACCGTGCAGCAGACGCAGCCGGGCGAGCAGGATGCCAA
GGCCAAGAATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3J064

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369