Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   OBG92_RS27710 Genome accession   NZ_CP109657
Coordinates   5886940..5887464 (-) Length   174 a.a.
NCBI ID   WP_034082521.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Zw26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5881940..5892464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS27695 (OBG92_05453) aroB 5883056..5884162 (-) 1107 WP_012077719.1 3-dehydroquinate synthase -
  OBG92_RS27700 (OBG92_05454) aroK 5884212..5884730 (-) 519 WP_003148769.1 shikimate kinase AroK -
  OBG92_RS27705 (OBG92_05455) pilQ 5884742..5886886 (-) 2145 WP_264315654.1 type 4a pilus secretin PilQ Machinery gene
  OBG92_RS27710 (OBG92_05456) comL/pilP 5886940..5887464 (-) 525 WP_034082521.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OBG92_RS27715 (OBG92_05457) pilO 5887461..5888084 (-) 624 WP_003148775.1 type 4a pilus biogenesis protein PilO Machinery gene
  OBG92_RS27720 (OBG92_05458) pilN 5888081..5888677 (-) 597 WP_003148777.1 type 4a pilus biogenesis protein PilN Machinery gene
  OBG92_RS27725 (OBG92_05459) pilM 5888677..5889741 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OBG92_RS27730 (OBG92_05460) - 5889926..5892397 (+) 2472 WP_012077723.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19085.90 Da        Isoelectric Point: 9.4114

>NTDB_id=679723 OBG92_RS27710 WP_034082521.1 5886940..5887464(-) (comL/pilP) [Pseudomonas aeruginosa strain Zw26]
MRARLIMSSLLLASLAGCGGGSDFADLQTYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=679723 OBG92_RS27710 WP_034082521.1 5886940..5887464(-) (comL/pilP) [Pseudomonas aeruginosa strain Zw26]
ATGAGAGCCCGTCTGATCATGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGCTCCGACTTCGCCGACCT
GCAGACCTACATGGACGAGGTACGGGCGCGTCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TTACCTATAGCGCCGCATCGCTGCGCAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACGGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAAACCTTCGAGATGGTCGGCAC
CCTGTCCAATGCCCAGGGCACCTTCGCCCTGGTGAAGGGGGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362