Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OBG92_RS23245 Genome accession   NZ_CP109657
Coordinates   4913227..4914441 (-) Length   404 a.a.
NCBI ID   WP_033996852.1    Uniprot ID   A0A2R3J0M9
Organism   Pseudomonas aeruginosa strain Zw26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4908227..4919441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS23240 (OBG92_04574) - 4911606..4912784 (-) 1179 WP_058145729.1 substrate-binding domain-containing protein -
  OBG92_RS23245 (OBG92_04575) pilC 4913227..4914441 (-) 1215 WP_033996852.1 type II secretion system inner membrane protein GspF Machinery gene
  OBG92_RS23250 (OBG92_04576) pilB 4914441..4915850 (-) 1410 WP_034079109.1 type II secretion system ATPase GspE Machinery gene
  OBG92_RS23255 (OBG92_04577) gspD 4915847..4918258 (-) 2412 WP_058145730.1 type II secretion system secretin GspD -
  OBG92_RS23260 (OBG92_04578) - 4918255..4918821 (-) 567 WP_034079105.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43385.55 Da        Isoelectric Point: 9.7361

>NTDB_id=679702 OBG92_RS23245 WP_033996852.1 4913227..4914441(-) (pilC) [Pseudomonas aeruginosa strain Zw26]
MQTFRYEAADAQGRIETGTLEADSPRGALGQLRARGLTPLEVREQAGAGGGQGGVALFAPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLGAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRVMLQASDFVRAWGWLCAGALGGGFWGWRL
YLRNPQARLDWHRRVLRLPLVGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLARAVEEATAQVREGVSL
ASALRARQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLMIVMAVLMPIIEMN
QLVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=679702 OBG92_RS23245 WP_033996852.1 4913227..4914441(-) (pilC) [Pseudomonas aeruginosa strain Zw26]
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGGCGGATCGAGACCGGGACCCTGGAGGCGGACAGCCCGCGCGG
CGCCCTCGGCCAGCTGCGCGCCCGCGGCCTGACTCCGCTGGAGGTCCGCGAGCAGGCCGGCGCCGGCGGCGGACAGGGTG
GCGTCGCTCTGTTCGCACCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAGCTGGCCAGCCTGCTGGCCGCC
AGCCTGCCGCTGGAAGCGGCGCTGAGCGCGACCCTCGACCAGGCCGAGCGCAAGCATATTGCACAGACCCTCGGCGCCGT
GCGCAGCGACGTGCGCGGTGGCATGCGCCTGGCCGACGCCCTCGCCGCGCGGCCGCGCGACTTTCCGGAAATCTACCGGG
CGCTGGTGGCGGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTAATGGAGCGCCTGGCCGACTACATCGAGGAACGCAAC
GCCTTGCGCGGCAAGATCCTCACCGCGTTCATCTATCCGGCGGTGGTCGGCGTGGTTTCCATCGGTATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTTTCCCAGGCGCGCCAGGACCTGCCGGCGCTGACCCGGGTGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCGGGAGCCCTCGGCGGTGGTTTCTGGGGCTGGCGCCTG
TACCTGCGCAACCCGCAGGCGCGGCTCGACTGGCATCGCCGGGTGCTGCGCCTGCCCCTGGTCGGCCGCTTCGTGCTCGG
GGTAAATACCGCGCGCTTCGCCTCCACCCTAGCGATCCTCGGCAGCGCCGGCGTGCCGCTGCTGCGCGCGCTCGACGCGG
CGCGCCAGACCCTGGCCAACGACTGCCTGGCGCGAGCGGTGGAGGAGGCCACCGCGCAGGTCCGCGAGGGCGTCTCGCTG
GCCTCGGCGCTGCGCGCGCGGCAGGTATTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGTGCGCT
GCCACCGATGCTCGACCGCGCGGCGCAGACCCTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGCTGCTCG
AACCGCTGATGATCGTGGTCATGGGCGGCGTGGTGCTGATGATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAACTGGTCCAGTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3J0M9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

37.376

100

0.374