Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OBG92_RS11945 Genome accession   NZ_CP109657
Coordinates   2523627..2524271 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain Zw26     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518627..2529271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS11930 (OBG92_02357) - 2519611..2520420 (+) 810 WP_058146678.1 helix-turn-helix transcriptional regulator -
  OBG92_RS11935 (OBG92_02358) - 2520451..2521479 (-) 1029 WP_256157638.1 AraC family transcriptional regulator -
  OBG92_RS11940 (OBG92_02359) - 2522111..2523259 (+) 1149 WP_256157639.1 FAD-dependent monooxygenase -
  OBG92_RS11945 (OBG92_02360) letA 2523627..2524271 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  OBG92_RS11950 (OBG92_02361) uvrC 2524272..2526098 (+) 1827 WP_033996661.1 excinuclease ABC subunit UvrC -
  OBG92_RS11955 (OBG92_02362) pgsA 2526132..2526692 (+) 561 WP_256157640.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OBG92_RS11965 (OBG92_02364) - 2527343..2528743 (-) 1401 WP_176540989.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=679686 OBG92_RS11945 WP_003090351.1 2523627..2524271(+) (letA) [Pseudomonas aeruginosa strain Zw26]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=679686 OBG92_RS11945 WP_003090351.1 2523627..2524271(+) (letA) [Pseudomonas aeruginosa strain Zw26]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAGGACTGTCTGAAACTGGCGCGCGAGCTGAAGCCGGACGTGGTCCTGATGG
ACGTCAAGATGCCCGGCATCGGCGGTCTGGAAGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTG
GTCACCGTCTGCGAGGAGGATCCGTTCCCCACTCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAGATGGTCCAGGCGATCCGCCAGGTGTTCGCCGGCCAGCGCTACATCAGCCCGCAGATCGCCCAGCAGCTGG
CGCTGAAATCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACGGTGAATACCTACCGCTACCG
TATCTTCGAGAAGCTCTCGATCACCAGCGATGTGGAACTGGCGTTGCTCGCCGTCCGTCATGGCATGGTCGACGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537