Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OBG92_RS02000 Genome accession   NZ_CP109657
Coordinates   417341..417706 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain Zw26     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412341..422706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS01970 (OBG92_00382) pyrR 412975..413487 (-) 513 WP_003157749.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  OBG92_RS01975 (OBG92_00383) ruvX 413588..414022 (-) 435 WP_053816547.1 Holliday junction resolvase RuvX -
  OBG92_RS01980 (OBG92_00384) - 414022..414591 (-) 570 WP_053816548.1 YqgE/AlgH family protein -
  OBG92_RS01985 (OBG92_00385) - 414640..415533 (-) 894 WP_003157746.1 energy transducer TonB -
  OBG92_RS01990 (OBG92_00386) gshB 415679..416632 (-) 954 WP_012073999.1 glutathione synthase -
  OBG92_RS01995 (OBG92_00387) pilG 416887..417294 (+) 408 WP_003148848.1 twitching motility response regulator PilG Regulator
  OBG92_RS02000 (OBG92_00388) pilH 417341..417706 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  OBG92_RS02005 (OBG92_00389) - 417756..418292 (+) 537 WP_003148849.1 chemotaxis protein CheW -
  OBG92_RS02010 (OBG92_00390) pilJ 418378..420426 (+) 2049 WP_012074000.1 chemotaxis chemoreceptor PilJ -
  OBG92_RS02015 (OBG92_00391) pilK 420487..421362 (+) 876 WP_003148852.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=679654 OBG92_RS02000 WP_003084587.1 417341..417706(+) (pilH) [Pseudomonas aeruginosa strain Zw26]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=679654 OBG92_RS02000 WP_003084587.1 417341..417706(+) (pilH) [Pseudomonas aeruginosa strain Zw26]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCTTGGCGCGCCAGGAAAAGCCCGACGTGGTCCTGATGGATATCG
TCATGCCCGGCCTCAACGGGTTCCAGGCGACCCGCCAGCTGACCAAGGACGCCGAGACCAGCGCCATTCCGGTGATCATC
GTCACCACCAAGGATCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACGCTGCTGAAAACTATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364