Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M0D48_RS04440 Genome accession   NZ_CP096141
Coordinates   1011492..1012550 (+) Length   352 a.a.
NCBI ID   WP_039409920.1    Uniprot ID   A0AB34P8V9
Organism   Xanthomonas prunicola strain CIX383     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006492..1017550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D48_RS04430 (M0D48_04430) - 1007857..1008507 (-) 651 WP_252162201.1 hypothetical protein -
  M0D48_RS04435 (M0D48_04435) - 1008847..1011276 (-) 2430 WP_252162202.1 penicillin-binding protein 1A -
  M0D48_RS04440 (M0D48_04440) comM 1011492..1012550 (+) 1059 WP_039409920.1 pilus assembly protein PilM Machinery gene
  M0D48_RS04445 (M0D48_04445) - 1012550..1013332 (+) 783 WP_101361969.1 PilN domain-containing protein -
  M0D48_RS04450 (M0D48_04450) - 1013329..1013994 (+) 666 WP_101361968.1 type 4a pilus biogenesis protein PilO -
  M0D48_RS04455 (M0D48_04455) - 1013991..1014524 (+) 534 WP_007974439.1 pilus assembly protein PilP -
  M0D48_RS04460 (M0D48_04460) - 1014544..1016493 (+) 1950 WP_260807360.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37640.24 Da        Isoelectric Point: 4.3924

>NTDB_id=679649 M0D48_RS04440 WP_039409920.1 1011492..1012550(+) (comM) [Xanthomonas prunicola strain CIX383]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=679649 M0D48_RS04440 WP_039409920.1 1011492..1012550(+) (comM) [Xanthomonas prunicola strain CIX383]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACACTACGCGGTGGAACCATTACCGCCGAACGCGGTGGTCGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGTGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCAATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCGAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAATGTGGAGCTGCGCCAGTCCGCGCTGGAACTCGGC
GGTCTGACCGCCAAGGTGATGGATGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
GGCTGCCGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGTTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTCTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGTCGTTACGGTCTCACCTACGAAGAA
GCCGGCCTTGCCAAGCGCCAGGGCGGTTTGCCGGAAAGCTATGAGGTCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTGGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCACGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474