Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OBG92_RS00180 Genome accession   NZ_CP109657
Coordinates   36159..36782 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain Zw26     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 31159..41782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS00155 (OBG92_00030) choX 31939..32862 (-) 924 WP_058145788.1 choline ABC transporter substrate-binding protein -
  OBG92_RS00160 (OBG92_00031) betC 32880..34391 (-) 1512 WP_003157288.1 choline-sulfatase -
  OBG92_RS00165 (OBG92_00032) - 34472..35419 (+) 948 WP_079976400.1 choline sulfate utilization transcriptional regulator -
  OBG92_RS00170 (OBG92_00033) - 35430..35807 (+) 378 WP_011979062.1 DOPA 4,5-dioxygenase family protein -
  OBG92_RS00175 (OBG92_00034) - 35786..36151 (-) 366 WP_011979063.1 Hpt domain-containing protein -
  OBG92_RS00180 (OBG92_00035) letA 36159..36782 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  OBG92_RS00185 (OBG92_00036) trpA 36967..37773 (-) 807 WP_003157285.1 tryptophan synthase subunit alpha -
  OBG92_RS00190 (OBG92_00037) trpB 37770..38978 (-) 1209 WP_003157284.1 tryptophan synthase subunit beta -
  OBG92_RS00195 (OBG92_00038) - 39082..39969 (+) 888 WP_079381757.1 LysR family transcriptional regulator -
  OBG92_RS00200 (OBG92_00039) - 40071..40286 (+) 216 WP_058145789.1 dodecin -
  OBG92_RS00205 (OBG92_00040) - 40398..40625 (+) 228 WP_011979066.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=679649 OBG92_RS00180 WP_003111192.1 36159..36782(-) (letA) [Pseudomonas aeruginosa strain Zw26]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=679649 OBG92_RS00180 WP_003111192.1 36159..36782(-) (letA) [Pseudomonas aeruginosa strain Zw26]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAAGCCGACAACGGTGCCGAGGCCCTGCAGGTAGCCCGCAAGAAATCCCCCGACCTGGCCATCCTCGATA
TCGGCATCCCGAAGATCGATGGCCTCGAGGTGATCGCCCGCCTGAAGTCGCTGAAGCTGGACACCAAGGTGCTGGTCCTG
ACCCGCCAGAATCCGGCCCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAGCGGGAGAATCT
ATCCGAACTGCTGCTCGCCGCCAAGGCCGTTCTCGCCGGCTACATCCATTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGGGACAACGAGGCGCGCATGCTGGAAAGCCTCTCCGACCGCGAAATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAGACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGACTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362