Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OKF33_RS05075 Genome accession   NZ_CP109654
Coordinates   989454..990002 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain 10-02932     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 984454..995002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS05050 rseP 984566..985669 (+) 1104 WP_002794139.1 RIP metalloprotease RseP -
  OKF33_RS05055 - 985666..986523 (+) 858 WP_052778975.1 VirK family antimicrobial peptide resistance protein -
  OKF33_RS05060 - 986516..987517 (-) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  OKF33_RS05065 - 987517..988788 (-) 1272 WP_002777080.1 MFS transporter -
  OKF33_RS05070 rpsF 989068..989445 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  OKF33_RS05075 ssb 989454..990002 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  OKF33_RS05080 rpsR 990013..990273 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  OKF33_RS05085 lon 990329..992704 (-) 2376 WP_002783351.1 endopeptidase La -
  OKF33_RS05090 - 992720..993367 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  OKF33_RS05095 fliW 993531..993920 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  OKF33_RS05100 proC 993920..994657 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  OKF33_RS05105 ctsT 994654..994959 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=679614 OKF33_RS05075 WP_002777084.1 989454..990002(+) (ssb) [Campylobacter coli strain 10-02932]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=679614 OKF33_RS05075 WP_002777084.1 989454..990002(+) (ssb) [Campylobacter coli strain 10-02932]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCGGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379