Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG627_RS32340 Genome accession   NZ_CP109599
Coordinates   7338043..7338705 (-) Length   220 a.a.
NCBI ID   WP_329071229.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7333043..7343705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS32325 (OG627_32350) - 7334605..7335867 (+) 1263 WP_329071225.1 sugar ABC transporter substrate-binding protein -
  OG627_RS32330 (OG627_32355) - 7335990..7336844 (+) 855 WP_329073132.1 sugar ABC transporter permease -
  OG627_RS32335 (OG627_32360) - 7336834..7337667 (+) 834 WP_329071227.1 carbohydrate ABC transporter permease -
  OG627_RS32340 (OG627_32365) vraR 7338043..7338705 (-) 663 WP_329071229.1 response regulator transcription factor Regulator
  OG627_RS32345 (OG627_32370) - 7338702..7339940 (-) 1239 WP_329071231.1 histidine kinase -
  OG627_RS32350 (OG627_32375) - 7340098..7340919 (-) 822 WP_329071233.1 ABC transporter permease -
  OG627_RS32355 (OG627_32380) - 7340916..7341860 (-) 945 WP_329071235.1 ATP-binding cassette domain-containing protein -
  OG627_RS32360 (OG627_32385) - 7342382..7343581 (+) 1200 WP_329071237.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24241.15 Da        Isoelectric Point: 5.2031

>NTDB_id=679511 OG627_RS32340 WP_329071229.1 7338043..7338705(-) (vraR) [Streptomyces sp. NBC_01429]
MTIRILLADDEPLLRMAFTMVLEAQPDMEPVGEAGDGAEAVRLARLLRPDVVLMDVRMPGTDGIEATGRIIRDCPRTRVL
VLTTFDLDEYAFAGLKAGASGFLLKNALPGELLAAIRSVAAGDAAVSPRITRRLLESFAHLLPVDREQVEDERLERLTAR
EREVLVEVARGLSNTEIAAALHLAEATVKTHLNRILTKLELRDRVQAVVFGYETRLIRPA

Nucleotide


Download         Length: 663 bp        

>NTDB_id=679511 OG627_RS32340 WP_329071229.1 7338043..7338705(-) (vraR) [Streptomyces sp. NBC_01429]
ATGACGATCCGTATCCTGCTCGCCGACGACGAACCACTGCTGCGCATGGCGTTCACCATGGTCCTGGAGGCCCAGCCGGA
CATGGAGCCGGTCGGGGAGGCCGGCGACGGAGCCGAAGCCGTGCGACTTGCCCGACTGCTCCGCCCCGATGTCGTCCTGA
TGGATGTCCGGATGCCCGGTACCGACGGCATCGAGGCGACCGGCCGGATCATCCGGGACTGCCCGCGGACCCGGGTCCTC
GTCCTCACCACCTTCGACCTCGACGAGTACGCCTTCGCCGGACTCAAAGCCGGGGCATCGGGCTTCCTCCTGAAGAACGC
CCTGCCAGGGGAACTCCTCGCGGCCATCCGAAGCGTCGCCGCCGGCGACGCGGCGGTCTCCCCGCGCATCACTCGTCGCC
TGCTGGAGAGCTTCGCCCACCTGCTCCCCGTAGACCGCGAGCAGGTGGAGGACGAGCGTCTGGAGCGGCTCACAGCACGC
GAACGCGAAGTACTCGTCGAGGTGGCCCGCGGCCTGTCGAACACCGAAATCGCCGCCGCTCTGCACCTCGCGGAGGCCAC
CGTGAAAACACACCTGAACCGGATCCTGACGAAGCTGGAACTGCGCGACCGGGTGCAGGCCGTCGTCTTCGGCTACGAGA
CCCGGCTCATCCGCCCGGCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.073

99.091

0.377
  degU Bacillus subtilis subsp. subtilis str. 168

37.674

97.727

0.368