Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG627_RS20085 Genome accession   NZ_CP109599
Coordinates   4591047..4592456 (-) Length   469 a.a.
NCBI ID   WP_329067033.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4586047..4597456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG627_RS20065 (OG627_20070) - 4586809..4587828 (-) 1020 WP_329067025.1 A/G-specific adenine glycosylase -
  OG627_RS20070 (OG627_20075) - 4588017..4588667 (-) 651 WP_329067027.1 phosphatase PAP2 family protein -
  OG627_RS20075 (OG627_20080) - 4588839..4589759 (+) 921 WP_329067029.1 hypothetical protein -
  OG627_RS20080 (OG627_20085) disA 4589878..4591002 (-) 1125 WP_329067031.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG627_RS20085 (OG627_20090) radA/sms 4591047..4592456 (-) 1410 WP_329067033.1 DNA repair protein RadA Machinery gene
  OG627_RS20090 (OG627_20095) - 4592666..4594543 (+) 1878 WP_329072825.1 sigma-70 family RNA polymerase sigma factor -
  OG627_RS20095 (OG627_20100) - 4594687..4595562 (-) 876 WP_329067035.1 hypothetical protein -
  OG627_RS20100 (OG627_20105) - 4595603..4596535 (+) 933 WP_329067037.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49349.55 Da        Isoelectric Point: 8.2508

>NTDB_id=679487 OG627_RS20085 WP_329067033.1 4591047..4592456(-) (radA/sms) [Streptomyces sp. NBC_01429]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGEVDVRTATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGPEHRTLYVTGEESASQVRLRADRIKALHDDLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDAPVPGTCLTVTLEGKRPLVVEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTQALVPTDPGKIPAGMKVTEVADMGDALRALPRRGRADAPRDDNARR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=679487 OG627_RS20085 WP_329067033.1 4591047..4592456(-) (radA/sms) [Streptomyces sp. NBC_01429]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGATGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGGACGGTGGAGGAGTACGGCGCGCCCGCGGTGCGGACCACGGCGGCGGGCC
GGGTCTCGACCGCCGCGCTCCCGATCGGCGAGGTCGACGTCCGTACGGCCACGGCGCGCTCCACCGGGGTGCCCGAGCTG
GACCGGGTGCTGGGCGGCGGTCTGGTGCCCGGCGCCGTGGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTCGCGGCGAAGGCGGCCGGCCCCGAGCACCGCACGCTTTATGTGACGGGCGAGGAGTCCGCGAGTCAGG
TGCGGCTGCGCGCCGACCGGATCAAGGCGCTCCACGACGATCTGTATCTCGCCGCCGAGACGGACCTCTCCGCCGTCCTC
GGCCATCTCGACGCGGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTACAGACCGTGGCCTCGCCCGAGATCGACGGCGC
TCCCGGCGGGATGGCGCAGGTGCGCGAGGTCGCGGGCGCGCTCATCCGGGCCTCGAAGGAGCGCGGGATGGCCACCCTGC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGTCCGCGGCTGCTGGAGCACCTCGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTCGTCCGCGGCATCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACCGGGCTGACCGACCCGTCGGGGCTGTTCCTGACCCGCCGCGACGCGCCGGTTCCCG
GTACGTGTCTGACCGTCACCCTGGAGGGCAAGCGCCCGCTCGTGGTGGAGGTGCAGGCGCTGACGGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACCACCTCCGGTCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGCCG
GATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTGACCGAGCCGGCCGCCGATCTCG
CGGTGGCGCTCGCGCTGGCCTCGGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGTGAGGTGGGGCTC
GCGGGGGAGGTCAGACGGGTCACTGGAGTGCAGCGCAGGCTCGCCGAGGCACACCGTCTGGGCTTCACCCAGGCGCTTGT
TCCGACCGACCCGGGGAAGATCCCCGCCGGTATGAAGGTCACGGAAGTCGCTGATATGGGTGATGCTCTGAGAGCGTTGC
CGCGCCGGGGTCGTGCGGACGCCCCACGGGACGACAACGCTCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(76-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.588

0.426
  radA Streptococcus pneumoniae Rx1

42.511

96.802

0.412
  radA Streptococcus pneumoniae D39

42.511

96.802

0.412
  radA Streptococcus pneumoniae R6

42.511

96.802

0.412
  radA Streptococcus pneumoniae TIGR4

42.511

96.802

0.412
  radA Streptococcus mitis SK321

44.159

91.258

0.403
  radA Streptococcus mitis NCTC 12261

44.159

91.258

0.403