Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   MZN67_RS09875 Genome accession   NZ_CP096116
Coordinates   2206957..2207271 (-) Length   104 a.a.
NCBI ID   WP_318793895.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2201957..2212271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS09850 (MZN67_09815) - 2202381..2202881 (-) 501 WP_061691666.1 hypothetical protein -
  MZN67_RS09855 (MZN67_09820) - 2203374..2204234 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  MZN67_RS09860 (MZN67_09825) - 2204352..2205548 (-) 1197 WP_161514349.1 murein transglycosylase A -
  MZN67_RS09865 (MZN67_09830) lpp1976 2205658..2206215 (-) 558 WP_374151957.1 hypothetical protein Machinery gene
  MZN67_RS09870 (MZN67_09835) lpp1977 2206212..2207018 (-) 807 WP_318793894.1 hypothetical protein Machinery gene
  MZN67_RS09875 (MZN67_09840) lpp1978 2206957..2207271 (-) 315 WP_318793895.1 type II secretion system protein Machinery gene
  MZN67_RS09880 (MZN67_09845) hisC 2207431..2208540 (+) 1110 WP_027265077.1 histidinol-phosphate transaminase -
  MZN67_RS09885 (MZN67_09850) - 2208577..2208918 (+) 342 WP_027265076.1 4a-hydroxytetrahydrobiopterin dehydratase -
  MZN67_RS09890 (MZN67_09855) secF 2209111..2210028 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  MZN67_RS09895 (MZN67_09860) secD 2210041..2211897 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  MZN67_RS09900 (MZN67_09865) yajC 2211919..2212254 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12295.39 Da        Isoelectric Point: 8.4863

>NTDB_id=679470 MZN67_RS09875 WP_318793895.1 2206957..2207271(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MSKHQGFTLMEVLVSLMLMTMVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDVRQSQK
KIILNVTWFKKSQSIIRSYDLDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=679470 MZN67_RS09875 WP_318793895.1 2206957..2207271(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAATGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTCG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCACCTTCAAATTATCATTTTGATGTCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCCATTATTCGCTCCTATGATCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

94.231

100

0.942
  lpp1978 Legionella pneumophila str. Paris

92.308

100

0.923