Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MZN67_RS04720 Genome accession   NZ_CP096116
Coordinates   1040900..1041484 (+) Length   194 a.a.
NCBI ID   WP_161504771.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1035900..1046484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS04700 (MZN67_04675) ravI 1037250..1038257 (-) 1008 WP_027266406.1 Dot/Icm T4SS effector RavI -
  MZN67_RS04705 (MZN67_04680) pilM 1038674..1039738 (+) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  MZN67_RS04710 (MZN67_04685) pilN 1039742..1040290 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  MZN67_RS04715 (MZN67_04690) pilO 1040304..1040903 (+) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  MZN67_RS04720 (MZN67_04695) pilP 1040900..1041484 (+) 585 WP_161504771.1 pilus assembly protein PilP Machinery gene
  MZN67_RS04725 (MZN67_04700) pilQ 1041488..1043584 (+) 2097 WP_011215098.1 type IV pilus secretin PilQ Machinery gene
  MZN67_RS04730 (MZN67_04705) aroK 1044030..1044557 (+) 528 WP_010946667.1 shikimate kinase AroK -
  MZN67_RS04735 (MZN67_04710) aroB 1044544..1045653 (+) 1110 WP_374152241.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22001.57 Da        Isoelectric Point: 10.3623

>NTDB_id=679451 MZN67_RS04720 WP_161504771.1 1040900..1041484(+) (pilP) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MIIKNNQMLILGFFGNSLSVSLTAATFRKSLLTGLLVLLLSACSGDSSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRII
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=679451 MZN67_RS04720 WP_161504771.1 1040900..1041484(+) (pilP) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGATAATTAAAAATAACCAGATGCTTATATTAGGCTTTTTCGGAAATTCTCTGAGTGTTTCACTCACAGCAGCGACTTT
CCGAAAAAGTCTATTGACGGGGTTATTGGTACTATTACTTAGTGCCTGCTCTGGTGATAGCAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATTATT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(49-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

94.33

100

0.943