Detailed information NTG0679440

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG875_RS21505
• Genome accession: NZ_CP109598
• Coordinates: 5022646..5023938 (+)
• Length: 430 a.a.
• NCBI ID: WP_330175851.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01498
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5017646..5028938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG875_RS21475 (OG875_21480)	-	5018603..5018797 (+)	195	WP_330175848.1	hypothetical protein	-
OG875_RS21490 (OG875_21495)	tig	5019418..5020869 (+)	1452	WP_330175849.1	trigger factor	-
OG875_RS21495 (OG875_21500)	clpP	5021150..5021755 (+)	606	WP_031231653.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG875_RS21500 (OG875_21505)	clpP	5021809..5022492 (+)	684	WP_330175850.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG875_RS21505 (OG875_21510)	clpX	5022646..5023938 (+)	1293	WP_330175851.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG875_RS21510 (OG875_21515)	-	5024029..5024961 (-)	933	WP_330175852.1	hypothetical protein	-
OG875_RS21515 (OG875_21520)	-	5025099..5027720 (+)	2622	WP_330175853.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 46979.87 Da
• Isoelectric Point: 4.8824

>NTDB_id=679440 OG875_RS21505 WP_330175851.1 5022646..5023938(+) (clpX) [Streptomyces sp. NBC_01498]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQAP
AKKALSVAVYNHYKRVQAGENGGGGGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEESDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLKILVEPRNALVKQYQRLFELDGVELDFDLPALEAIADQAILRGTGARGLRAILEEVLQSVMYEVPSRKDVARVVIT
ADVVRNNVNPTLVPREPRIVKNDGRHEKSA

Nucleotide

• Length: 1293 bp

>NTDB_id=679440 OG875_RS21505 WP_330175851.1 5022646..5023938(+) (clpX) [Streptomyces sp. NBC_01498]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGTCCCGGGGTCTATATCTGCGACGAGTGCATCGACCTCTGCAATGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTGCGGTGGGAGGAACTGCCCAAGCCGCGGGAGATCTACGAGTTCCTGGAGGGGTACGTCGTCGGGCAGGCGCCC
GCGAAGAAGGCCCTCTCGGTGGCGGTCTACAACCACTACAAGCGGGTGCAGGCCGGGGAGAACGGCGGCGGCGGAGGCCG
CGACGACGCGATCGAGCTCGCCAAGTCGAACATCCTGCTCCTGGGCCCCACGGGATCCGGCAAGACTCTTCTCGCCCAGA
CGCTGGCCCGGATGCTGAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACGGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGACGTCTCCGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACGACGGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCGCGGGCCTGGAGAAGATCATCGAGTCACGGGCCGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGGGAGATCGAGGAGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCGGTCCTGACGTCGGTGCACAACCTGGACCGC
GAAGCGCTCCTGAAGATCCTGGTCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGACCTCCCGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCGGCACCGGCGCGCGCGGTCTGC
GCGCGATCCTGGAGGAGGTCCTCCAGTCGGTGATGTACGAGGTGCCCTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTCGTGCGCAACAACGTCAACCCGACGCTGGTTCCGCGCGAGCCGCGCATCGTGAAGAACGACGGCCGCCACGA
GAAGTCGGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.488	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.814	0.512