Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   L6E24_RS01280 Genome accession   NZ_CP096115
Coordinates   346349..347359 (-) Length   336 a.a.
NCBI ID   WP_257742932.1    Uniprot ID   A0A9E7TIQ1
Organism   Methanoplanus endosymbiosus strain DSM 3599     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341349..352359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6E24_RS01255 (L6E24_01240) - 341741..342919 (-) 1179 WP_257742927.1 NDP-sugar synthase -
  L6E24_RS01260 (L6E24_01245) - 343212..343691 (+) 480 WP_257742928.1 YkgJ family cysteine cluster protein -
  L6E24_RS01265 (L6E24_01250) - 343684..343950 (+) 267 WP_257742929.1 hypothetical protein -
  L6E24_RS01270 (L6E24_01255) - 343955..345427 (-) 1473 WP_257742930.1 cobyric acid synthase -
  L6E24_RS01275 (L6E24_01260) yciH 345701..346006 (+) 306 WP_257742931.1 stress response translation initiation inhibitor YciH -
  L6E24_RS01280 (L6E24_01265) epdK 346349..347359 (-) 1011 WP_257742932.1 type II secretion system F family protein Machinery gene
  L6E24_RS01285 (L6E24_01270) epdJ 347361..348284 (-) 924 WP_257742933.1 type II secretion system F family protein Machinery gene
  L6E24_RS14695 - 348277..351249 (-) 2973 WP_308219134.1 ATPase, T2SS/T4P/T4SS family -
  L6E24_RS01295 (L6E24_01280) - 351261..351890 (-) 630 WP_257742934.1 hypothetical protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36894.95 Da        Isoelectric Point: 8.3219

>NTDB_id=679436 L6E24_RS01280 WP_257742932.1 346349..347359(-) (epdK) [Methanoplanus endosymbiosus strain DSM 3599]
MRLFKKKDKKDQISDTDPKQDEILNKIESRRKAKTGINRIIHNPLKFLTENPLNILIVSVPAAIIIFLAGFITTVRDYGI
KSLITSTFIDDIFVITLVVALTPLAFFYTKEGMRIKNIEVALPNFFRDVAGMNESGMTLPTAIHSVANGDYGGLTQHIKK
LDNEISWNVPFVEAIYRFGENLGTPLARRSVDLIAKASKAGGNVSEVLNAAANDSYEFVNLADERRNNMMIYVVIVLVSF
LVFLFVIAIMTGTFLDTMAEAGEAASASSGGDTPGMSFGGSVDMGLYRRIFSHAAMIQGFFSGLVAGQMGEGSALSGLKY
SLIMLLIAWVSFRFFI

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=679436 L6E24_RS01280 WP_257742932.1 346349..347359(-) (epdK) [Methanoplanus endosymbiosus strain DSM 3599]
ATGAGACTATTTAAAAAGAAGGATAAAAAAGATCAGATCTCGGATACAGATCCAAAACAGGATGAAATTCTGAATAAGAT
AGAAAGCAGGCGAAAGGCAAAAACAGGGATTAACAGAATTATTCACAATCCGCTGAAATTCCTGACCGAAAATCCACTCA
ATATTCTAATTGTCTCAGTACCCGCAGCAATAATCATTTTTCTTGCCGGATTTATAACAACTGTAAGAGATTACGGAATA
AAATCACTGATTACATCGACATTTATAGATGATATCTTTGTAATCACGCTCGTAGTCGCACTTACTCCGCTTGCATTTTT
TTATACTAAAGAAGGAATGAGAATAAAAAACATTGAAGTTGCGCTTCCGAATTTTTTCAGGGATGTTGCCGGAATGAACG
AGAGCGGTATGACATTGCCTACTGCCATACATTCGGTAGCAAATGGAGATTACGGCGGCCTTACACAGCACATAAAAAAA
CTGGACAATGAAATCTCCTGGAATGTCCCTTTTGTTGAGGCAATATACAGATTTGGCGAAAATCTCGGCACTCCGCTTGC
AAGAAGAAGTGTTGATCTTATTGCAAAGGCGAGCAAAGCAGGAGGAAATGTCAGTGAGGTTTTAAACGCAGCAGCAAACG
ACTCCTACGAATTTGTAAACCTTGCAGACGAAAGGAGAAATAATATGATGATATATGTGGTGATAGTTCTTGTATCATTC
CTTGTTTTTCTGTTTGTTATTGCAATTATGACAGGTACATTTCTTGATACAATGGCCGAAGCCGGTGAGGCAGCCTCAGC
CTCTTCAGGAGGGGATACGCCCGGAATGTCTTTTGGTGGGTCTGTTGATATGGGACTATACAGGAGAATTTTTTCTCATG
CCGCTATGATTCAGGGTTTCTTCTCCGGACTTGTTGCAGGGCAGATGGGTGAAGGAAGTGCTCTTTCCGGCCTGAAATAT
TCACTGATAATGCTGCTCATTGCATGGGTGTCATTCAGATTCTTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(125-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

59.236

93.452

0.554