Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   L6E24_RS01285 Genome accession   NZ_CP096115
Coordinates   347361..348284 (-) Length   307 a.a.
NCBI ID   WP_257742933.1    Uniprot ID   A0A9E7TKJ4
Organism   Methanoplanus endosymbiosus strain DSM 3599     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342361..353284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6E24_RS01260 (L6E24_01245) - 343212..343691 (+) 480 WP_257742928.1 YkgJ family cysteine cluster protein -
  L6E24_RS01265 (L6E24_01250) - 343684..343950 (+) 267 WP_257742929.1 hypothetical protein -
  L6E24_RS01270 (L6E24_01255) - 343955..345427 (-) 1473 WP_257742930.1 cobyric acid synthase -
  L6E24_RS01275 (L6E24_01260) yciH 345701..346006 (+) 306 WP_257742931.1 stress response translation initiation inhibitor YciH -
  L6E24_RS01280 (L6E24_01265) epdK 346349..347359 (-) 1011 WP_257742932.1 type II secretion system F family protein Machinery gene
  L6E24_RS01285 (L6E24_01270) epdJ 347361..348284 (-) 924 WP_257742933.1 type II secretion system F family protein Machinery gene
  L6E24_RS14695 - 348277..351249 (-) 2973 WP_308219134.1 ATPase, T2SS/T4P/T4SS family -
  L6E24_RS01295 (L6E24_01280) - 351261..351890 (-) 630 WP_257742934.1 hypothetical protein -
  L6E24_RS01300 (L6E24_01285) - 352059..352853 (+) 795 WP_257742935.1 A24 family peptidase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 33920.72 Da        Isoelectric Point: 8.5485

>NTDB_id=679437 L6E24_RS01285 WP_257742933.1 347361..348284(-) (epdJ) [Methanoplanus endosymbiosus strain DSM 3599]
MNSLERFCFNLMGDRARKKRDDYLSLRTDMVKARMKTPFEAYLATAYVSAIVAGLLMAFVIGIITYALKLPSLVVYRGEV
PDIVVTLSQYNLIIGTVLVVILSLLIFGGVTYSLFLIYPGILAKERKRNIDATLPYAINYITAMSTAGITPAEVFRLLGE
SPIYGESSVEARFVARDVDIFGKDLVEALRIAGQYTPSARMKDFYQGAVASISSGSNLSDYFRNKAGQYTRENRQEQKTF
LETLGLISESYVTALVAGTLFLIILQSIMSTISGSSNPLFLYAVIYGIIPMGSIMFVILIDSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=679437 L6E24_RS01285 WP_257742933.1 347361..348284(-) (epdJ) [Methanoplanus endosymbiosus strain DSM 3599]
ATGAATAGTTTGGAGAGATTTTGTTTCAACCTTATGGGCGACCGCGCCAGGAAAAAGAGGGATGATTATCTCTCTCTCAG
AACTGATATGGTAAAAGCCAGAATGAAAACGCCATTTGAGGCATATCTCGCAACAGCATATGTTTCAGCAATAGTTGCAG
GACTTCTTATGGCATTTGTCATCGGAATTATCACATATGCCTTAAAACTCCCCAGTCTGGTAGTTTACCGCGGAGAGGTT
CCTGACATAGTCGTCACCCTCAGCCAGTATAATCTTATAATAGGCACAGTTCTGGTTGTAATACTCTCACTTCTGATATT
TGGGGGGGTTACCTACTCTCTGTTTTTAATTTATCCCGGAATACTGGCAAAAGAAAGAAAGAGAAATATTGATGCAACCC
TCCCATATGCAATAAATTATATTACTGCAATGTCCACAGCAGGGATAACACCGGCAGAAGTATTCAGGCTCCTTGGAGAA
AGTCCGATATATGGCGAAAGTTCAGTAGAGGCAAGATTTGTTGCACGCGATGTGGATATATTTGGTAAAGATCTTGTTGA
AGCTTTAAGAATAGCAGGACAATATACACCAAGCGCCAGAATGAAGGATTTTTATCAGGGTGCTGTTGCAAGCATATCCA
GCGGCAGTAATCTTTCTGATTATTTCAGAAACAAAGCCGGACAGTACACAAGGGAAAACAGGCAGGAGCAGAAGACATTT
CTTGAAACGCTTGGCCTGATCTCAGAATCATATGTTACTGCACTTGTTGCAGGCACATTATTCCTCATTATTCTTCAGTC
AATAATGTCAACTATAAGCGGGTCTTCAAATCCGTTGTTTCTCTATGCTGTAATATATGGAATAATTCCGATGGGCAGTA
TAATGTTTGTGATACTTATAGATTCTATGACTCCTGAGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

67.427

100

0.674