Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   OG875_RS20985 Genome accession   NZ_CP109598
Coordinates   4898463..4900685 (+) Length   740 a.a.
NCBI ID   WP_330175758.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01498     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4893463..4905685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG875_RS20965 (OG875_20970) - 4893750..4894811 (-) 1062 WP_330175755.1 LacI family DNA-binding transcriptional regulator -
  OG875_RS20970 (OG875_20975) - 4894934..4896085 (+) 1152 WP_330175756.1 Gfo/Idh/MocA family oxidoreductase -
  OG875_RS20975 (OG875_20980) - 4896082..4897308 (+) 1227 WP_330175757.1 dihydrodipicolinate synthase family protein -
  OG875_RS20980 (OG875_20985) - 4897386..4898177 (+) 792 WP_330177838.1 sugar phosphate isomerase/epimerase family protein -
  OG875_RS20985 (OG875_20990) recD/recD2/recDB 4898463..4900685 (+) 2223 WP_330175758.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OG875_RS20990 (OG875_20995) - 4901070..4902359 (+) 1290 WP_330175759.1 citrate synthase -
  OG875_RS20995 (OG875_21000) - 4903031..4903375 (-) 345 WP_330175760.1 heavy-metal-associated domain-containing protein -
  OG875_RS21000 (OG875_21005) - 4903545..4904249 (-) 705 WP_330175761.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79728.39 Da        Isoelectric Point: 6.7856

>NTDB_id=679437 OG875_RS20985 WP_330175758.1 4898463..4900685(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01498]
MSNLAVLEGVLERITYSNEENGYTVARVDTGRGADLLTVVGSLLGAQPGESLRMEGRWASHPQYGKQFTVENYTTVLPAT
IQGIRRYLGSGLIKGIGPRIAERIVEHFGVDTLEIIEKEPARLVEVPGLGPKRTKMIGAAWEEQKAIKEVMIFLQGVGVS
TSIAVRIYKKYGDASISVVRNEPYRLAADVWGIGFLTADRIAQAVGIPHDSPDRAKAGLQYALSQSTDQGHCFLPEEQLI
SDAVKLLQVDTGLVIDCLAELAAEDEGVVREKVPGPDGGEPVTAVYLVPFHRAELSLSAQLLRLLRAGEDRMPAFQDVVW
EKALPWLAGRTGAELAPEQEAAVRLALTRKVAVLTGGPGCGKSFTVRSIVELAKAKKAKVVLAAPTGRAAKRLAELTGAE
ASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLAKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAEG
GPVPQVRLTRIFRQAQQSGVVTNAHRINSGVQPLTQGLSDFFLFVEDDTEEAGKLTVDVAARRIPATFGLDPRRDIQVLA
PMHRGPAGAGTLNGLLQQAITPARPELPEKRLGGRVFRVGDKVTQIRNNYDKGRNGVFNGTVGVVTSLNLDDQCLTVRTD
EDEDVPYDFDELDELAHAYAVTIHRSQGSEYPAVVVPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRFTALDHRLSGSLRPAAL

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=679437 OG875_RS20985 WP_330175758.1 4898463..4900685(+) (recD/recD2/recDB) [Streptomyces sp. NBC_01498]
ATGTCCAACCTGGCCGTGCTCGAAGGCGTTCTTGAGCGGATCACGTACAGCAACGAGGAGAACGGCTACACCGTCGCCCG
TGTCGACACCGGCCGGGGCGCCGATCTGCTCACCGTGGTCGGCTCGCTCCTCGGCGCGCAGCCGGGCGAGTCCCTGCGGA
TGGAGGGCCGTTGGGCCTCGCACCCGCAGTACGGCAAACAGTTCACGGTCGAGAATTACACGACGGTCCTGCCGGCGACC
ATCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGATCAAGGGAATCGGCCCGCGCATCGCCGAGCGGATCGTCGAGCA
CTTCGGTGTCGACACCCTGGAGATCATCGAGAAGGAGCCCGCGCGGCTGGTCGAGGTGCCCGGCCTCGGCCCGAAGCGGA
CGAAGATGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAAGTCATGATCTTCCTTCAGGGCGTCGGCGTCTCC
ACCTCGATCGCGGTCCGCATCTACAAGAAGTACGGCGACGCCTCGATCTCCGTCGTACGGAACGAGCCCTACCGGCTGGC
GGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTGGGCATCCCGCACGACAGCCCGGACC
GCGCCAAGGCCGGACTCCAGTACGCGCTCAGCCAGTCCACCGACCAGGGCCACTGCTTCCTTCCCGAGGAGCAGCTCATC
TCGGACGCGGTGAAGCTTCTCCAGGTCGACACCGGTCTGGTCATCGACTGCCTGGCCGAACTCGCCGCCGAGGACGAGGG
AGTCGTCCGGGAGAAGGTGCCGGGCCCCGACGGGGGCGAGCCGGTCACCGCCGTCTATCTGGTGCCCTTCCACCGCGCCG
AACTGTCGCTGTCCGCACAGCTGCTGCGGTTGCTGCGGGCCGGGGAGGACCGGATGCCCGCCTTCCAGGACGTCGTCTGG
GAGAAGGCCCTGCCCTGGCTCGCGGGCCGTACGGGAGCCGAGCTGGCCCCCGAGCAGGAGGCGGCGGTGCGGCTCGCCCT
CACCCGTAAGGTCGCCGTCCTGACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGCTCGATCGTGGAGCTGGCCA
AGGCCAAGAAGGCCAAGGTGGTGCTGGCGGCGCCCACCGGCCGCGCGGCCAAGCGCCTCGCGGAGCTGACCGGCGCCGAG
GCGTCCACGGTTCACCGGCTGCTGGAGCTCAAGCCGGGCGGGGACGCCGCGTACGACCGGGACCGGCCGCTCGACGCCGA
TCTGGTCGTCGTCGACGAGGCGTCGATGCTGGATCTGCTGCTCGCCAACAAACTCGCGAAGGCCGTGGCACCCGGTGCGC
ATCTGCTGCTCGTCGGGGATGTCGACCAACTGCCGTCGGTGGGCGCCGGGGAGGTGCTGCGGGACCTGCTGGCGGAAGGC
GGGCCGGTGCCGCAGGTGCGGCTGACCCGGATCTTCCGGCAGGCCCAGCAGTCGGGCGTGGTCACCAACGCGCACCGGAT
CAACTCCGGGGTCCAGCCGCTCACCCAGGGCCTGAGCGACTTCTTCCTCTTCGTGGAGGACGACACGGAGGAGGCCGGGA
AGCTGACGGTGGATGTCGCGGCCCGCCGCATCCCCGCCACCTTCGGGCTCGACCCGCGGCGCGACATCCAGGTACTGGCG
CCCATGCACCGGGGCCCGGCCGGCGCGGGCACGCTCAACGGCCTGCTCCAGCAGGCCATCACCCCCGCCCGGCCCGAGCT
GCCGGAGAAGCGGCTCGGCGGGCGGGTCTTCCGGGTCGGCGACAAGGTGACCCAGATCCGCAACAACTACGACAAGGGCC
GGAACGGGGTCTTCAACGGCACGGTCGGGGTCGTGACCTCGCTGAACCTGGACGACCAGTGCCTGACGGTGCGGACGGAC
GAGGACGAGGACGTGCCGTACGACTTCGACGAGCTGGACGAGCTGGCGCACGCGTACGCGGTGACGATCCACCGCTCCCA
GGGCAGCGAGTATCCGGCGGTGGTCGTCCCGGTCACCACGGGCGCCTGGATGATGCTCCAGCGGAATCTGCTGTACACGG
CGGTGACCCGGGCCAAGAAGCTCGTCGTCCTGGTCGGCTCCCGGAAGGCGATAGGCCAGGCGGTACGTACGGTCTCGGCC
GGCCGCCGCTTCACCGCCCTCGACCACCGGCTCTCGGGCAGCCTCCGGCCCGCCGCCCTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

Helix-hairpin-helix domain (HHH_5)

(93-137)

AAA domain (AAA_30)

(334-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.948

100

0.361