Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0D62_RS10505 Genome accession   NZ_CP096114
Coordinates   2150959..2151354 (-) Length   131 a.a.
NCBI ID   WP_000932697.1    Uniprot ID   A0A7U7PX14
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2145959..2156354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS10480 (M0D62_10470) thiE 2146564..2147205 (-) 642 WP_047437285.1 thiamine phosphate synthase -
  M0D62_RS10485 (M0D62_10475) thiM 2147207..2147998 (-) 792 WP_047437283.1 hydroxyethylthiazole kinase -
  M0D62_RS10490 (M0D62_10480) thiD 2147982..2148812 (-) 831 WP_047437280.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  M0D62_RS10495 (M0D62_10485) tenA 2148809..2149495 (-) 687 WP_248129741.1 thiaminase II -
  M0D62_RS10500 (M0D62_10490) sceD 2149875..2150567 (-) 693 WP_031787703.1 lytic transglycosylase SceD -
  M0D62_RS10505 (M0D62_10495) ssb 2150959..2151354 (-) 396 WP_000932697.1 single-stranded DNA-binding protein Machinery gene
  M0D62_RS10510 (M0D62_10500) - 2151548..2151988 (+) 441 WP_000846749.1 YwpF-like family protein -
  M0D62_RS10515 (M0D62_10505) fabZ 2152046..2152486 (-) 441 WP_047437274.1 3-hydroxyacyl-ACP dehydratase FabZ -
  M0D62_RS10520 (M0D62_10510) murA 2152520..2153785 (-) 1266 WP_000358013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  M0D62_RS10525 (M0D62_10515) - 2153897..2154130 (-) 234 WP_000384521.1 DUF1146 family protein -
  M0D62_RS10530 (M0D62_10520) - 2154462..2154866 (-) 405 WP_001094393.1 F0F1 ATP synthase subunit epsilon -
  M0D62_RS10535 (M0D62_10525) atpD 2154886..2156298 (-) 1413 WP_000511140.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15016.10 Da        Isoelectric Point: 5.2398

>NTDB_id=679431 M0D62_RS10505 WP_000932697.1 2150959..2151354(-) (ssb) [Staphylococcus argenteus strain MRSA-139-14-168]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=679431 M0D62_RS10505 WP_000932697.1 2150959..2151354(-) (ssb) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGCGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PX14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

93.893

100

0.939
  ssb Staphylococcus aureus MW2

93.13

100

0.931