Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG875_RS06430 Genome accession   NZ_CP109598
Coordinates   1558313..1559098 (+) Length   261 a.a.
NCBI ID   WP_330173268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01498     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1553313..1564098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG875_RS06415 (OG875_06415) - 1553361..1553888 (+) 528 WP_330173265.1 TerD family protein -
  OG875_RS06420 (OG875_06420) - 1554090..1556987 (-) 2898 WP_330173266.1 vitamin B12-dependent ribonucleotide reductase -
  OG875_RS06425 (OG875_06425) nrdR 1557245..1557754 (-) 510 WP_330173267.1 transcriptional regulator NrdR -
  OG875_RS06430 (OG875_06430) dinR/lexA 1558313..1559098 (+) 786 WP_330173268.1 transcriptional repressor LexA Regulator
  OG875_RS06435 (OG875_06435) - 1559222..1561192 (-) 1971 WP_330173269.1 ATP-dependent DNA helicase -
  OG875_RS06440 (OG875_06440) - 1561347..1562033 (-) 687 WP_330177619.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28285.95 Da        Isoelectric Point: 7.4238

>NTDB_id=679406 OG875_RS06430 WP_330173268.1 1558313..1559098(+) (dinR/lexA) [Streptomyces sp. NBC_01498]
MTTTADSATITTQDRSQSRLEPVHAMNDAATNPEGAKPSRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQQTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPHNAAY
QPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=679406 OG875_RS06430 WP_330173268.1 1558313..1559098(+) (dinR/lexA) [Streptomyces sp. NBC_01498]
GTGACCACCACCGCAGACAGCGCCACCATTACCACCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACAAATCCGGAGGGCGCGAAGCCCTCGCGCTCGCTTCCCGGCCGACCTCCGGGAATCCGGGCGGACAGCT
CCGGTCTCACGGACCGGCAGCGGCGGGTCATCGAAGTCATCCGCGACTCGGTGCAGCGGCGGGGATATCCTCCGTCGATG
CGCGAGATCGGCCAGGCCGTCGGCCTGTCCAGCACGTCCTCCGTGGCCCACCAGCTGATGGCTCTGGAGCGCAAGGGATT
CCTGCGCAGGGACCCGCACCGCCCGAGGGCGTACGAGGTCCGGGGGTCCGACCAGCCGAGCACCCAGCAGACGGACACCA
CCGGCAAACCCGCCGCGTCCTACGTGCCGTTGGTGGGCCGGATCGCGGCCGGCGGACCGATCCTCGCCGAGGAGTCCGTC
GAGGACGTCTTCCCGCTCCCCCGCCAACTGGTGGGCGACGGTGAGCTGTTCGTTCTCAAGGTCGTCGGTGACTCGATGAT
CGAGGCGGCCATCTGTGACGGCGACTGGGTGACGGTGCGCCGTCAGCCGGTGGCCGAGAACGGGGACATCGTCGCGGCGA
TGCTCGACGGTGAGGCCACCGTCAAGCGCTTCCGGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCGGCGTAC
CAGCCGATCCCCGGCGACGACGCCACCATCCTCGGCAAGGTCGTGGCGGTCCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(54-117)

Peptidase S24-like (Peptidase_S24)

(143-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375