Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   M0D62_RS04880 Genome accession   NZ_CP096114
Coordinates   990921..991907 (+) Length   328 a.a.
NCBI ID   WP_047434052.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 985921..996907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS04860 (M0D62_04855) - 986317..987938 (+) 1622 Protein_916 peptide ABC transporter substrate-binding protein -
  M0D62_RS04865 (M0D62_04860) trpS 988017..989006 (-) 990 WP_047429897.1 tryptophan--tRNA ligase -
  M0D62_RS04870 (M0D62_04865) spxA 989300..989695 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  M0D62_RS04875 (M0D62_04870) mecA 990067..990786 (+) 720 WP_047434050.1 adaptor protein MecA -
  M0D62_RS04880 (M0D62_04875) coiA 990921..991907 (+) 987 WP_047434052.1 competence protein CoiA family protein Machinery gene
  M0D62_RS04885 (M0D62_04880) pepF 991955..993763 (+) 1809 WP_047429890.1 oligoendopeptidase F -
  M0D62_RS04890 (M0D62_04885) yjbH 994335..995141 (-) 807 WP_031787339.1 protease adaptor protein YjbH -
  M0D62_RS04895 (M0D62_04890) - 995164..995529 (-) 366 WP_031787340.1 truncated hemoglobin YjbI -
  M0D62_RS04900 (M0D62_04895) - 995651..996244 (-) 594 WP_047434054.1 CYTH domain-containing protein -
  M0D62_RS04905 (M0D62_04900) - 996428..996775 (+) 348 WP_001242105.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38779.35 Da        Isoelectric Point: 9.8203

>NTDB_id=679405 M0D62_RS04880 WP_047434052.1 990921..991907(+) (coiA) [Staphylococcus argenteus strain MRSA-139-14-168]
MLIALNKERQRVSATSAERALQYFCPACGNPVILKRGHKVVSHFAHKHLTEQKCFNNETIKHYKSKLTLAQMLMQQGYQV
EIEPFLKEIRQIPDLIINNKYAFELQLSTIPYRQVLQRTEGLNKLGYKVVWLLDDIQIFQSKLKLSHFQSIFINPFTRRF
YTFNLEKQQIFEFKQLQSLGGNNFLATKMEAHIKELFIEIPHNVKSIIKLSKSSIIQYIKYCRWQNSVLQPTLSAMYQLR
LTDEAVVINYGYIFPEQIYIENHPIEWQLHVDLMLNSKDNLTIYDFLDYFKIRNFLIPLESKLVIVKKLINNYLNLNSKR
GNDVQILL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=679405 M0D62_RS04880 WP_047434052.1 990921..991907(+) (coiA) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGTTAATAGCTTTAAATAAAGAAAGACAACGAGTGTCAGCAACATCTGCTGAAAGAGCGTTGCAATATTTTTGTCCAGC
ATGTGGAAATCCGGTTATTTTAAAAAGGGGACATAAAGTAGTAAGTCATTTTGCACATAAGCATTTAACAGAACAAAAAT
GTTTTAATAATGAGACGATTAAACATTACAAAAGCAAATTAACATTAGCACAAATGTTAATGCAGCAAGGATATCAAGTT
GAAATAGAGCCATTTTTAAAAGAAATTAGGCAGATTCCTGATTTAATAATTAACAATAAATATGCATTTGAACTACAATT
ATCAACTATACCGTATAGACAAGTTTTACAACGTACAGAAGGTTTGAATAAATTAGGCTATAAAGTTGTTTGGTTGCTTG
ATGATATACAAATATTTCAAAGTAAGCTGAAATTAAGTCATTTTCAAAGTATTTTTATCAATCCATTTACACGTAGATTC
TATACATTTAATTTAGAGAAACAACAGATTTTTGAATTTAAACAATTACAAAGTTTAGGTGGCAACAATTTTTTGGCGAC
TAAAATGGAAGCACATATTAAAGAATTATTTATTGAGATACCACACAATGTTAAATCAATTATTAAATTATCTAAATCCT
CTATTATTCAATATATCAAATATTGTCGCTGGCAAAACTCGGTTTTACAACCAACATTAAGTGCTATGTATCAATTACGG
TTAACAGATGAAGCTGTAGTGATTAATTATGGCTATATTTTCCCAGAACAAATATATATCGAAAATCATCCGATAGAATG
GCAATTACACGTTGATTTAATGTTAAATAGTAAGGATAATCTTACTATTTATGATTTTTTAGATTACTTCAAAATAAGGA
ATTTTTTAATACCATTAGAATCAAAGTTAGTAATTGTGAAAAAACTTATTAACAATTATTTAAATCTTAATTCAAAAAGA
GGTAATGACGTGCAAATTTTGTTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

67.683

100

0.677
  coiA Staphylococcus aureus N315

67.378

100

0.674