Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   M0D62_RS02675 Genome accession   NZ_CP096114
Coordinates   553634..554203 (+) Length   189 a.a.
NCBI ID   WP_047433735.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548634..559203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS02650 (M0D62_02645) cysE 549847..550494 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  M0D62_RS02655 (M0D62_02650) cysS 550478..551878 (+) 1401 WP_047433732.1 cysteine--tRNA ligase -
  M0D62_RS02660 (M0D62_02655) - 551871..552275 (+) 405 WP_047430424.1 Mini-ribonuclease 3 -
  M0D62_RS02665 (M0D62_02660) rlmB 552283..553029 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M0D62_RS02670 (M0D62_02665) - 553029..553553 (+) 525 WP_000664733.1 NYN domain-containing protein -
  M0D62_RS02675 (M0D62_02670) sigH 553634..554203 (+) 570 WP_047433735.1 RNA polymerase sigma factor Regulator
  M0D62_RS02680 (M0D62_02675) rpmG 554319..554462 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  M0D62_RS02685 (M0D62_02680) secE 554518..554700 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  M0D62_RS02690 (M0D62_02685) nusG 554713..555261 (+) 549 WP_047433737.1 transcription termination/antitermination protein NusG -
  M0D62_RS02695 (M0D62_02690) rplK 555442..555864 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  M0D62_RS02700 (M0D62_02695) rplA 556072..556764 (+) 693 WP_001074615.1 50S ribosomal protein L1 -
  M0D62_RS02705 (M0D62_02700) rplJ 557036..557536 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  M0D62_RS02710 (M0D62_02705) rplL 557580..557948 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  M0D62_RS02715 (M0D62_02710) - 558136..558744 (+) 609 WP_047433739.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23072.07 Da        Isoelectric Point: 9.5603

>NTDB_id=679397 M0D62_RS02675 WP_047433735.1 553634..554203(+) (sigH) [Staphylococcus argenteus strain MRSA-139-14-168]
MKRCISVHNNVEKHSNIVDENEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYYDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=679397 M0D62_RS02675 WP_047433735.1 553634..554203(+) (sigH) [Staphylococcus argenteus strain MRSA-139-14-168]
TTGAAAAGATGTATATCAGTACATAATAATGTTGAAAAACACAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAAT
AACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATATCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTATTTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATTATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

68.617

99.471

0.683
  sigH Staphylococcus aureus MW2

68.085

99.471

0.677