Detailed information NTG0679285

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: MY487_RS16605
• Genome accession: NZ_CP096033
• Coordinates: 3377128..3378291 (-)
• Length: 387 a.a.
• NCBI ID: WP_007407484.1
• Uniprot ID: A3KLC1
• Organism: Bacillus amyloliquefaciens strain GL18
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3372128..3383291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY487_RS16575 (MY487_16575)	-	3372393..3372812 (-)	420	WP_012118571.1	TIGR03826 family flagellar region protein	-
MY487_RS16580 (MY487_16580)	comFC	3372886..3373575 (-)	690	WP_197197403.1	double zinc ribbon domain-containing protein	Machinery gene
MY487_RS16585 (MY487_16585)	-	3373581..3373865 (-)	285	WP_007407481.1	competence protein ComFB	-
MY487_RS16590 (MY487_16590)	comFA	3373923..3375308 (-)	1386	WP_012118573.1	DEAD/DEAH box helicase	Machinery gene
MY487_RS16595 (MY487_16595)	-	3375416..3376264 (-)	849	WP_003151387.1	DegV family protein	-
MY487_RS16600 (MY487_16600)	degU	3376362..3377051 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
MY487_RS16605 (MY487_16605)	degS	3377128..3378291 (-)	1164	WP_007407484.1	two-component sensor histidine kinase DegS	Regulator
MY487_RS16610 (MY487_16610)	-	3378514..3379161 (+)	648	WP_007614107.1	YigZ family protein	-
MY487_RS16615 (MY487_16615)	-	3379166..3380386 (+)	1221	WP_012118574.1	LCP family protein	-
MY487_RS16620 (MY487_16620)	-	3380485..3381561 (-)	1077	WP_003151382.1	MraY family glycosyltransferase	-
MY487_RS16625 (MY487_16625)	-	3381694..3382890 (-)	1197	WP_012118575.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.78 Da
• Isoelectric Point: 6.8616

>NTDB_id=679285 MY487_RS16605 WP_007407484.1 3377128..3378291(-) (degS) [Bacillus amyloliquefaciens strain GL18]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=679285 MY487_RS16605 WP_007407484.1 3377128..3378291(-) (degS) [Bacillus amyloliquefaciens strain GL18]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

3D structure

• AlphaFold DB: A3KLC1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951