Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MY487_RS16580 Genome accession   NZ_CP096033
Coordinates   3372886..3373575 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GL18     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367886..3378575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY487_RS16545 (MY487_16545) fliW 3367977..3368408 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  MY487_RS16550 (MY487_16550) - 3368438..3369007 (-) 570 WP_023357152.1 DUF6470 family protein -
  MY487_RS16555 (MY487_16555) flgL 3369098..3370015 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  MY487_RS16560 (MY487_16560) flgK 3370027..3371544 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  MY487_RS16565 (MY487_16565) - 3371560..3372042 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MY487_RS16570 (MY487_16570) flgM 3372057..3372323 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  MY487_RS16575 (MY487_16575) - 3372393..3372812 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  MY487_RS16580 (MY487_16580) comFC 3372886..3373575 (-) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  MY487_RS16585 (MY487_16585) - 3373581..3373865 (-) 285 WP_007407481.1 competence protein ComFB -
  MY487_RS16590 (MY487_16590) comFA 3373923..3375308 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  MY487_RS16595 (MY487_16595) - 3375416..3376264 (-) 849 WP_003151387.1 DegV family protein -
  MY487_RS16600 (MY487_16600) degU 3376362..3377051 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MY487_RS16605 (MY487_16605) degS 3377128..3378291 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=679282 MY487_RS16580 WP_197197403.1 3372886..3373575(-) (comFC) [Bacillus amyloliquefaciens strain GL18]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=679282 MY487_RS16580 WP_197197403.1 3372886..3373575(-) (comFC) [Bacillus amyloliquefaciens strain GL18]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594