Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG467_RS30380 Genome accession   NZ_CP109589
Coordinates   6760398..6762131 (-) Length   577 a.a.
NCBI ID   WP_329573490.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01361     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6755398..6767131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS30370 (OG467_30430) - 6757021..6758373 (+) 1353 WP_329573488.1 sigma-70 family RNA polymerase sigma factor -
  OG467_RS30375 (OG467_30435) rcrQ 6758470..6760398 (-) 1929 WP_329573489.1 ABC transporter ATP-binding protein Regulator
  OG467_RS30380 (OG467_30440) rcrP 6760398..6762131 (-) 1734 WP_329573490.1 ABC transporter ATP-binding protein Regulator
  OG467_RS30385 (OG467_30445) - 6762269..6763708 (-) 1440 WP_329573491.1 FGGY family carbohydrate kinase -
  OG467_RS30390 (OG467_30450) - 6763796..6764104 (-) 309 WP_329573492.1 YtxH domain-containing protein -
  OG467_RS30410 (OG467_30470) - 6765402..6766034 (+) 633 WP_329573493.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62421.56 Da        Isoelectric Point: 6.5090

>NTDB_id=679282 OG467_RS30380 WP_329573490.1 6760398..6762131(-) (rcrP) [Streptomyces sp. NBC_01361]
MLIRLLRTYLSPYKKPIGVLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILAFGAIMIAITVVQMVCNIGAVYYGA
RTASALGRDVRASVFDRVQSFSAREMGQFGAPSLITRTTNDVQQVQMLTLMTFTLMVSAPIMCVGGIVMALGQDVPLSGV
LLAVVPVLGISVSLIVRRLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFREANADLTAVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PSAPVRELRSHGHLEIRDAGFRYPGAEEPVLKAIQVTARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TIEPALLARTVGLVPQKPYLFAGTVATNLRYGNPDASDEDLWHALEVAQAKDFVKKLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETAEATVVIVAQRVSTIRDADRIVVLDEGHVVGTGTHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=679282 OG467_RS30380 WP_329573490.1 6760398..6762131(-) (rcrP) [Streptomyces sp. NBC_01361]
GTGCTCATACGACTCCTTCGGACGTACCTCAGTCCGTACAAGAAACCCATCGGCGTGCTGGTGCTGCTGCAGTTTCTGCA
GACCTGCGCCTCGCTCTACCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTGGCCTTCGGCGCCATCATGATCGCGATCACCGTGGTCCAGATGGTCTGCAACATCGGCGCCGTGTACTACGGCGCG
CGCACCGCGTCCGCGCTCGGACGGGACGTCCGGGCCTCCGTGTTCGACCGCGTGCAGTCCTTCTCGGCACGCGAGATGGG
CCAGTTCGGGGCGCCGTCCCTGATCACCCGCACGACGAACGACGTGCAGCAGGTCCAGATGCTCACGCTCATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTGGGCCAGGACGTTCCCCTGTCCGGCGTG
CTGCTCGCCGTGGTCCCGGTCCTCGGGATCAGCGTCAGCCTGATCGTGCGCCGCCTGCGCCCGCTGTTCCGCGCCATGCA
GGTGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGCGTCATCCGCGCCTTCGTACGCGACG
GCTACGAGAAGGAGCGCTTCCGCGAGGCCAACGCCGATCTGACCGCGGTCTCCCTCGGTACCGGCAAGCTCCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACATCTCGTCGATCGCCGTCGTCTGGTTCGGCGCACACCGCATCGACAGCGG
CGGCATGCAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGAGCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGTCCAGCGTCGTGCCG
CCGTCCGCGCCGGTGCGGGAGCTGCGCAGCCACGGTCATCTGGAGATCCGGGACGCGGGCTTCCGCTACCCGGGTGCCGA
GGAGCCTGTGCTCAAGGCCATCCAGGTCACCGCGCGCCCCGGTGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTCCTCGGCCTGGTGCCGCGGCTGTTCGACGCGACCGACGGCGAGGTCCTGGTGGACGGCGTCGACGTGCGC
ACCATCGAGCCGGCGCTCCTCGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACCGTCGCGAC
GAATCTGCGGTACGGCAATCCGGACGCGAGTGACGAGGACCTGTGGCACGCCCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGAAGAAGCTGGAGAACGGGCTCGACTCCCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGCCAGAGGCTC
GCGATCGCGCGGACGCTGGTACAGCGGCCCGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCGCTGCGGGCCGCGCTGGGGCACGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GCGACGCGGACCGCATCGTGGTCCTCGACGAGGGCCATGTCGTGGGCACCGGCACCCATCACGAGCTGATGGCCGGCAAT
GAGACGTACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.821

97.054

0.386