Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG467_RS30375 Genome accession   NZ_CP109589
Coordinates   6758470..6760398 (-) Length   642 a.a.
NCBI ID   WP_329573489.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01361     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6753470..6765398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS30360 (OG467_30420) - 6753588..6754862 (+) 1275 WP_329573487.1 FAD-dependent oxidoreductase -
  OG467_RS30365 (OG467_30425) dnaG 6754897..6756795 (+) 1899 WP_100591871.1 DNA primase -
  OG467_RS30370 (OG467_30430) - 6757021..6758373 (+) 1353 WP_329573488.1 sigma-70 family RNA polymerase sigma factor -
  OG467_RS30375 (OG467_30435) rcrQ 6758470..6760398 (-) 1929 WP_329573489.1 ABC transporter ATP-binding protein Regulator
  OG467_RS30380 (OG467_30440) rcrP 6760398..6762131 (-) 1734 WP_329573490.1 ABC transporter ATP-binding protein Regulator
  OG467_RS30385 (OG467_30445) - 6762269..6763708 (-) 1440 WP_329573491.1 FGGY family carbohydrate kinase -
  OG467_RS30390 (OG467_30450) - 6763796..6764104 (-) 309 WP_329573492.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69300.67 Da        Isoelectric Point: 5.3081

>NTDB_id=679281 OG467_RS30375 WP_329573489.1 6758470..6760398(-) (rcrQ) [Streptomyces sp. NBC_01361]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLIRQFKPEKTTMFAMVACVVLSVGLSVLGPKILGRATDLVFAGIIGREMPSGS
SKAQVIAGMRAKGDSGVADMLSGIDFTPGQGIDFDAVGSVLGLALCTFLGAGLLMAVATRLSNRALNKTVFRMREDIQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSFLIATRVGK
RSQPQFVQQWKTTGKLNAHIEEMYTGHTLVKVFGRQEESAKAFAEQNDALYDAGFKAQFNSGMMQPLMFFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEADPVPSEKPDLLRGLVEFE
NVSFRYEQDKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLLRFYEVTGGRITLDGVDVAKMSRDELRSGIGMVLQDT
WLFGGTIADNIAYGATKDVTREQIEEAARAAHADRFIRTLPEGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMENGDIVEQGTHEALRAAGGAYERLYNAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=679281 OG467_RS30375 WP_329573489.1 6758470..6760398(-) (rcrQ) [Streptomyces sp. NBC_01361]
ATGGCGGGGCCAGGCGGGCGGATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGCTCGGGCAAGCG
GCTCATCAGGCAGTTCAAGCCCGAGAAGACGACGATGTTCGCGATGGTCGCGTGCGTCGTCCTGAGTGTGGGCCTGTCGG
TGCTGGGCCCGAAGATCCTGGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCATCGGGCGTGAGATGCCGTCCGGGAGC
AGCAAGGCGCAGGTCATCGCGGGGATGCGGGCCAAGGGTGACTCCGGGGTCGCCGACATGCTCTCCGGGATCGACTTCAC
GCCCGGCCAGGGCATCGACTTCGACGCCGTGGGCTCCGTGCTGGGACTCGCCCTCTGTACGTTCCTGGGGGCCGGTCTCC
TGATGGCCGTGGCGACGCGGCTGTCGAACCGGGCGCTCAACAAGACCGTCTTCCGGATGCGCGAGGACATCCAGGCGAAG
CTGTCGCGCCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGCGCCACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGCGTGCTGGTGATGATGT
TCTGGATCTCGCCGCTGCTCGCGCTGGTGGCCCTGGTGACGGTGCCGCTGTCGTTCCTGATCGCGACGCGGGTCGGCAAG
CGGTCACAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGCCA
CACCCTGGTGAAGGTGTTCGGGCGTCAGGAGGAGTCGGCGAAGGCGTTCGCCGAGCAGAACGACGCGCTCTACGACGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATGATGCAGCCGCTGATGTTCTTCGTGTCGAACCTGAACTATGTGCTCGTCGCC
GTGGTGGGTGGCCTGCGGGTCGCCTCGGGTTCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGACGAGCAGGAGGCCGACCCGGTGCCGAGCGAGAAGCCCGATCTGCTGCGCGGGCTCGTCGAGTTCGAG
AACGTGTCGTTCCGCTACGAGCAGGACAAGCCGCTCATCGAGGACCTGTCGCTCGCCGTGGAGCCGGGTCACACCGTCGC
CATCGTGGGCCCGACGGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGCTCCGCTTCTACGAGGTGACCGGCGGGCGCA
TCACCCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGAACTCCGTTCCGGGATCGGCATGGTGCTCCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCCACGAAGGACGTCACGCGGGAGCAGATAGAGGAGGC
GGCACGGGCCGCCCACGCGGACCGGTTCATCCGGACGCTGCCCGAGGGCTACGACACCGTGATCGACGACGAGGGGGCGG
GGGTCAGCGCCGGCGAGAAGCAGCTCATCACCATCGCGCGCGCGTTCCTTTCGGACCCGGTGATACTCGTCCTCGACGAG
GCGACGAGCTCCGTCGACACCCGTACCGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCGCACGGGCGGACCAGCTT
TGTCATCGCCCACCGGCTGTCCACGATCCGCGATGCCGACACCATCCTGGTGATGGAGAACGGGGACATCGTGGAGCAGG
GCACGCACGAGGCGCTGCGCGCTGCCGGTGGGGCGTATGAGCGGCTGTACAACGCGCAGTTCGCGCAGGCCGTTGCCGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

45.369

82.399

0.374