Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG467_RS22610 Genome accession   NZ_CP109589
Coordinates   5027621..5028220 (-) Length   199 a.a.
NCBI ID   WP_116511760.1    Uniprot ID   A0A437PZ07
Organism   Streptomyces sp. NBC_01361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5022621..5033220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS22590 (OG467_22640) - 5023316..5023984 (-) 669 WP_100596378.1 SigE family RNA polymerase sigma factor -
  OG467_RS22595 (OG467_22645) - 5024342..5025409 (-) 1068 WP_329571815.1 aspartate-semialdehyde dehydrogenase -
  OG467_RS22600 (OG467_22650) - 5025409..5026689 (-) 1281 WP_100596380.1 aspartate kinase -
  OG467_RS22605 (OG467_22655) - 5026969..5027628 (-) 660 WP_329571818.1 DUF5063 domain-containing protein -
  OG467_RS22610 (OG467_22660) recR 5027621..5028220 (-) 600 WP_116511760.1 recombination mediator RecR Machinery gene
  OG467_RS22615 (OG467_22665) - 5028311..5028652 (-) 342 WP_100596383.1 YbaB/EbfC family nucleoid-associated protein -
  OG467_RS22620 (OG467_22670) - 5028922..5029683 (+) 762 WP_329571821.1 SLATT domain-containing protein -
  OG467_RS22625 (OG467_22675) - 5029699..5030199 (-) 501 WP_329581753.1 GNAT family N-acetyltransferase -
  OG467_RS22630 (OG467_22680) - 5030220..5030870 (-) 651 WP_100596386.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21808.24 Da        Isoelectric Point: 4.9909

>NTDB_id=679265 OG467_RS22610 WP_116511760.1 5027621..5028220(-) (recR) [Streptomyces sp. NBC_01361]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=679265 OG467_RS22610 WP_116511760.1 5027621..5028220(-) (recR) [Streptomyces sp. NBC_01361]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTCGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGTCTCGCGCAGGCCCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTGGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCACGGTC
ATCTGCGTCGTCGAGGAGCCCAAGGACGTCGTCGCCATCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATAAGGGAACTCCTCGCCCGTCTCGCCGACGGCA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCGATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCGGTGGGGGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A437PZ07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462