Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG467_RS21610 Genome accession   NZ_CP109589
Coordinates   4824116..4825525 (+) Length   469 a.a.
NCBI ID   WP_100597753.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4819116..4830525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS21595 (OG467_21640) - 4820121..4821053 (-) 933 WP_329571517.1 Ppx/GppA phosphatase family protein -
  OG467_RS21600 (OG467_21645) - 4821254..4822120 (+) 867 WP_329581721.1 hypothetical protein -
  OG467_RS21605 (OG467_21650) - 4822153..4823871 (-) 1719 WP_329571519.1 hypothetical protein -
  OG467_RS21610 (OG467_21655) radA/sms 4824116..4825525 (+) 1410 WP_100597753.1 DNA repair protein RadA Machinery gene
  OG467_RS21615 (OG467_21660) disA 4825669..4826793 (+) 1125 WP_329571522.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG467_RS21620 (OG467_21665) - 4827121..4827921 (-) 801 WP_329571524.1 hypothetical protein -
  OG467_RS21625 (OG467_21670) - 4828107..4828748 (+) 642 WP_329571525.1 phosphatase PAP2 family protein -
  OG467_RS21630 (OG467_21675) - 4828749..4829396 (-) 648 WP_329571527.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49685.81 Da        Isoelectric Point: 8.0022

>NTDB_id=679259 OG467_RS21610 WP_100597753.1 4824116..4825525(+) (radA/sms) [Streptomyces sp. NBC_01361]
MAARTKSGKDRPSYRCTECGWQTAKWLGRCGECQAWGTVEEYGVPAVRTTAPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRSRRREAPRETEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=679259 OG467_RS21610 WP_100597753.1 4824116..4825525(+) (radA/sms) [Streptomyces sp. NBC_01361]
ATGGCTGCCCGTACGAAATCCGGCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCGAAATGGCT
GGGTCGCTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGTGCCCGCCGTGCGGACGACCGCGCCCGGCC
GGGTCACGACGTCCGCCGTCCCGATCGGCCAGGTCGACGCCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTC
GACCGGGTCCTCGGCGGGGGCCTCGTACCCGGCGCCGTCGTCCTGGTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
CCTGCTCGACGTCGCCGCCAAGGCCGCCAGCGACGAGCACCGCACCCTGTATGTCACGGGTGAGGAGTCGGCCAGCCAGG
TCCGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTATCTCGCCGCCGAGACCGATCTGTCCGCGGTCCTC
GGCCACTTGGACGCCGTCAAGCCCAGCCTCCTGATCATGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCCTCCAAGGACCGCGGCATGGCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTCCTTGAACACCTCGTGGACGTAGTCCTCTCCTTC
GAAGGCGACAGGCACGCGCGCCTGCGCCTCGTCCGCGGTGTGAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGCTT
CGAGCTCCACGACGAGGGCATCACGGGACTCGCCGACCCCAGCGGGCTGTTCCTCACCCGCCGCGACGAGCCCGTTCCCG
GGACGTGTCTCACCGTCACCCTGGAGGGGCGGCGGCCCCTTGTCGCCGAGGTCCAGGCCCTCACCGTCGACTCCCAGATC
CCGTCCCCCCGGCGTACGACGTCCGGCCTGGAGACCTCTCGCGTCTCGATGATGCTCGCCGTACTCGAGCAGCGCGGGCG
GATCAGCGCCCTGGGAAAGCGGGACATCTACTCCGCGACCGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCATCGCGCTCGCCCTCGCCAGCGCCGCCAGCGACACCCCGCTCCCCAAGAACCTCGTCGCGATCGGTGAAGTTGGCCTC
GCGGGCGAGGTCAGACGGGTGACCGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACCCACGCCCTCGT
GCCGAGCGATCCCGGCAAGGTGCCTGCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCTCTGCGCGTGCTGC
CCAGGAGCCGTCGCCGAGAGGCCCCACGGGAGACGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.257

96.375

0.407
  radA Streptococcus pneumoniae D39

44

90.618

0.399
  radA Streptococcus pneumoniae R6

44

90.618

0.399
  radA Streptococcus pneumoniae Rx1

44

90.618

0.399
  radA Streptococcus mitis SK321

44

90.618

0.399
  radA Streptococcus mitis NCTC 12261

44

90.618

0.399
  radA Streptococcus pneumoniae TIGR4

44

90.618

0.399