Detailed information NTG0679205

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MY525_RS18560
• Genome accession: NZ_CP096018
• Coordinates: 4094885..4095754 (-)
• Length: 289 a.a.
• NCBI ID: WP_250657341.1
• Uniprot ID: -
• Organism: Alkalimarinus coralli strain SCSIO 12817
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4089885..4100754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY525_RS18520	-	4090754..4091005 (-)	252	WP_250657333.1	YkgJ family cysteine cluster protein	-
MY525_RS18525	-	4091283..4091741 (+)	459	WP_250657334.1	PilZ domain-containing protein	-
MY525_RS18530	tsaA	4091770..4092483 (-)	714	WP_250657335.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
MY525_RS18535	-	4092480..4093199 (-)	720	WP_250657336.1	LrgB family protein	-
MY525_RS18540	-	4093192..4093554 (-)	363	WP_250657337.1	CidA/LrgA family protein	-
MY525_RS18545	-	4093580..4094020 (-)	441	WP_250657338.1	HIT family protein	-
MY525_RS18550	yacG	4094072..4094287 (-)	216	WP_250657339.1	DNA gyrase inhibitor YacG	-
MY525_RS18555	coaE	4094262..4094876 (-)	615	WP_250657340.1	dephospho-CoA kinase	-
MY525_RS18560	pilD	4094885..4095754 (-)	870	WP_250657341.1	prepilin peptidase	Machinery gene
MY525_RS18565	pilC	4095830..4097050 (-)	1221	WP_250657342.1	type II secretion system F family protein	Machinery gene
MY525_RS18570	pilB	4097053..4098762 (-)	1710	WP_250657343.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MY525_RS18580	-	4099098..4099553 (+)	456	WP_275975288.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31993.23 Da
• Isoelectric Point: 6.8222

>NTDB_id=679205 MY525_RS18560 WP_250657341.1 4094885..4095754(-) (pilD) [Alkalimarinus coralli strain SCSIO 12817]
MQTFELFLNSPEYLYPAIFILGLIIGSFLNVVIYRIPKILEKEWKSQCCELLEIEGKEEPKITLSTPNSTCPKCGHEIKP
WENIPIISYLFLRGKCSSCKTHISVRYPIIELVTGLLSLAVICVLGANWAGFSALLLTWVLIALTMIDFDTQLLPDNMTL
PLVWLGLIVNAYGLFAPLETALWGAVAGYLSLWSVYHAFKLLTGKEGMGFGDFKLLAALGAWMGWQMLPVIILLSSLVGA
IVGILLIAIKGRDKNIPIPFGPYLAAAGWLALLWGHDITQAYLQFSGMK

Nucleotide

• Length: 870 bp

>NTDB_id=679205 MY525_RS18560 WP_250657341.1 4094885..4095754(-) (pilD) [Alkalimarinus coralli strain SCSIO 12817]
ATGCAAACTTTCGAACTGTTTTTAAACTCTCCAGAGTACTTATACCCTGCTATTTTTATTCTCGGATTAATTATCGGCAG
CTTCTTAAATGTCGTCATCTATCGTATACCCAAAATACTTGAGAAAGAGTGGAAGTCTCAGTGCTGTGAACTACTGGAGA
TTGAGGGTAAAGAAGAACCTAAAATAACATTATCGACTCCCAATTCGACCTGCCCGAAATGTGGTCATGAGATCAAGCCC
TGGGAAAACATACCGATCATTAGCTATCTATTTCTGCGTGGAAAGTGCTCCTCTTGCAAAACCCACATATCCGTTAGATA
TCCAATAATAGAGCTTGTAACAGGCCTTCTTTCACTCGCTGTTATTTGCGTGCTTGGCGCTAATTGGGCTGGCTTTTCTG
CACTGCTGCTTACATGGGTACTGATCGCATTAACGATGATCGACTTTGACACTCAACTGCTTCCTGACAATATGACATTG
CCACTGGTGTGGCTCGGACTTATTGTTAACGCTTACGGCCTGTTTGCCCCTTTAGAAACCGCTTTATGGGGCGCGGTGGC
TGGCTACCTGAGCTTATGGTCCGTTTATCATGCTTTCAAACTACTCACCGGTAAGGAAGGTATGGGCTTTGGCGACTTCA
AACTACTGGCCGCATTAGGGGCCTGGATGGGGTGGCAGATGCTGCCAGTTATCATTCTGCTCTCTTCATTAGTCGGTGCT
ATTGTTGGTATTTTACTTATTGCCATTAAAGGAAGGGATAAGAACATTCCCATACCGTTTGGCCCTTACCTTGCTGCGGC
TGGCTGGTTGGCCCTGCTTTGGGGGCATGACATCACTCAGGCATATCTCCAGTTTTCAGGTATGAAATAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	55.197	96.54	0.533
pilD	Acinetobacter baumannii D1279779	54.839	96.54	0.529
pilD	Vibrio cholerae strain A1552	54.286	96.886	0.526
pilD	Vibrio campbellii strain DS40M4	52.708	95.848	0.505
pilD	Neisseria gonorrhoeae MS11	52.239	92.734	0.484