Detailed information NTG0679204

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MY525_RS15635
• Genome accession: NZ_CP096018
• Coordinates: 3433947..3435308 (-)
• Length: 453 a.a.
• NCBI ID: WP_250656791.1
• Uniprot ID: -
• Organism: Alkalimarinus coralli strain SCSIO 12817
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3428947..3440308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY525_RS15605	-	3429517..3430116 (-)	600	WP_250656785.1	pilus assembly PilX family protein	-
MY525_RS15610	-	3430128..3430889 (-)	762	WP_250656786.1	PilW family protein	-
MY525_RS15615	pilV	3430914..3431477 (-)	564	WP_250656787.1	type IV pilus modification protein PilV	-
MY525_RS15620	-	3431490..3432050 (-)	561	WP_250656788.1	GspH/FimT family pseudopilin	-
MY525_RS15625	-	3432166..3432699 (-)	534	WP_250656789.1	GspH/FimT family pseudopilin	-
MY525_RS15630	thiO	3432797..3433903 (+)	1107	WP_250656790.1	glycine oxidase ThiO	-
MY525_RS15635	pilR	3433947..3435308 (-)	1362	WP_250656791.1	sigma-54-dependent transcriptional regulator	Regulator
MY525_RS15640	-	3435321..3436943 (-)	1623	WP_250656792.1	sensor histidine kinase	-
MY525_RS15645	-	3437085..3438713 (+)	1629	WP_250656793.1	NAD+ synthase	-
MY525_RS15650	-	3438799..3439623 (-)	825	WP_250656794.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50769.13 Da
• Isoelectric Point: 4.7646

>NTDB_id=679204 MY525_RS15635 WP_250656791.1 3433947..3435308(-) (pilR) [Alkalimarinus coralli strain SCSIO 12817]
MTIKTALIVDDEPDIRELLEITLMRMGIDTCTAENLTKAKALLEQHEFNLCLTDMNLPDGNGIDLVCHIQQFYPQIPVAV
ITAYGSVETAISSLKSGAFDFVSKPVDLARLRELVSSALKLTEEKKASKEIVETGNLLLGESPEMERLRKQIRKLARSQA
PVYISGESGSGKELVARMMHLQGPRSEAPFVPVNCGAIPSELMESEFFGHKKGSFSGAVENKEGLFQAANGGTLFLDEVA
DLPIGMQVKLLRAIQEKAIRAVGDQKEVSVDVRILSATHKNLAELVEAGDFRQDLYYRINVIELDVPKLRERKGDIPLLA
NHILQRIAEECDVHDAKISEEAMKCLENYHFPGNVRELENIIERAFTLCEDDIIEVTDLQLRPANKADNAIDFSDNTIQR
DEETSLEDYLEGIERKTIEQALEETRWNKTAAAKKLGITFRALRYRLKKLDME

Nucleotide

• Length: 1362 bp

>NTDB_id=679204 MY525_RS15635 WP_250656791.1 3433947..3435308(-) (pilR) [Alkalimarinus coralli strain SCSIO 12817]
ATGACGATTAAAACAGCCCTTATTGTTGATGACGAACCCGATATTCGAGAGCTTCTGGAAATCACCTTGATGAGGATGGG
TATCGACACCTGTACAGCCGAAAACCTGACCAAGGCAAAAGCACTTTTAGAGCAGCATGAGTTCAATCTCTGCCTAACAG
ACATGAACCTTCCTGACGGCAACGGCATCGACCTGGTGTGCCATATACAGCAGTTTTATCCTCAGATACCTGTTGCGGTC
ATTACAGCATACGGCAGCGTGGAAACCGCAATATCATCCTTAAAATCAGGGGCGTTTGACTTTGTATCAAAGCCAGTAGA
CCTTGCCCGATTAAGAGAACTGGTTAGTTCAGCGCTAAAACTGACCGAAGAGAAAAAGGCTAGCAAAGAGATTGTCGAGA
CCGGAAACCTCTTGCTCGGCGAGTCTCCTGAAATGGAGCGATTGAGAAAACAGATCCGCAAGCTGGCGCGTAGTCAGGCC
CCAGTCTATATCAGCGGCGAGTCAGGCAGTGGCAAGGAGTTGGTTGCACGCATGATGCACCTGCAGGGGCCGCGCTCTGA
AGCTCCGTTCGTCCCGGTGAACTGTGGAGCCATTCCCAGCGAGCTAATGGAAAGCGAGTTTTTTGGGCATAAAAAAGGGA
GCTTTAGCGGTGCTGTAGAAAACAAAGAAGGCCTCTTTCAAGCGGCGAATGGAGGCACACTATTTCTCGATGAAGTCGCC
GACTTGCCGATTGGTATGCAGGTAAAACTGCTTAGGGCAATACAGGAAAAAGCGATACGTGCAGTTGGCGATCAGAAAGA
AGTCTCCGTCGATGTCAGGATACTCAGCGCCACGCACAAAAATTTGGCCGAGCTTGTTGAAGCAGGAGATTTCCGGCAAG
ACCTTTACTATAGAATCAACGTCATTGAACTTGATGTCCCAAAACTAAGAGAGCGCAAAGGAGATATCCCCCTACTTGCC
AACCATATTCTGCAACGAATTGCTGAAGAGTGTGACGTACATGATGCAAAGATTAGTGAAGAGGCGATGAAATGCCTAGA
AAACTATCACTTCCCAGGCAACGTACGCGAGCTCGAAAACATCATTGAGCGGGCCTTTACCCTATGCGAAGATGACATTA
TAGAAGTGACCGACCTTCAGCTTCGCCCTGCAAATAAAGCCGACAATGCAATCGACTTTTCGGACAATACGATACAAAGA
GACGAAGAAACCTCTTTGGAGGATTACCTCGAAGGCATTGAAAGAAAAACGATCGAACAGGCTTTAGAAGAGACACGCTG
GAACAAAACCGCCGCAGCCAAAAAGCTTGGCATTACATTTCGCGCCCTGCGTTACCGCTTAAAGAAGTTAGATATGGAGT
AG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.253	100	0.675
pilR	Acinetobacter baumannii strain A118	50.873	100	0.514