Detailed information NTG0679130

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: MY523_RS00150
• Genome accession: NZ_CP096016
• Coordinates: 29516..30877 (-)
• Length: 453 a.a.
• NCBI ID: WP_250656791.1
• Uniprot ID: -
• Organism: Alkalimarinus coralli strain SCSIO 12582
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 24516..35877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MY523_RS00120	-	25086..25685 (-)	600	WP_250656785.1	PilX N-terminal domain-containing pilus assembly protein	-
MY523_RS00125	-	25697..26458 (-)	762	WP_250656786.1	PilW family protein	-
MY523_RS00130	pilV	26483..27046 (-)	564	WP_250656787.1	type IV pilus modification protein PilV	-
MY523_RS00135	-	27059..27619 (-)	561	WP_250656788.1	GspH/FimT family pseudopilin	-
MY523_RS00140	-	27735..28268 (-)	534	WP_250656789.1	GspH/FimT family pseudopilin	-
MY523_RS00145	thiO	28366..29472 (+)	1107	WP_250656790.1	glycine oxidase ThiO	-
MY523_RS00150	pilR	29516..30877 (-)	1362	WP_250656791.1	sigma-54 dependent transcriptional regulator	Regulator
MY523_RS00155	-	30890..32512 (-)	1623	WP_250656792.1	PAS domain-containing sensor histidine kinase	-
MY523_RS00160	-	32654..34282 (+)	1629	WP_250656793.1	NAD+ synthase	-
MY523_RS00165	-	34368..35192 (-)	825	WP_250656794.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50769.13 Da
• Isoelectric Point: 4.7646

>NTDB_id=679130 MY523_RS00150 WP_250656791.1 29516..30877(-) (pilR) [Alkalimarinus coralli strain SCSIO 12582]
MTIKTALIVDDEPDIRELLEITLMRMGIDTCTAENLTKAKALLEQHEFNLCLTDMNLPDGNGIDLVCHIQQFYPQIPVAV
ITAYGSVETAISSLKSGAFDFVSKPVDLARLRELVSSALKLTEEKKASKEIVETGNLLLGESPEMERLRKQIRKLARSQA
PVYISGESGSGKELVARMMHLQGPRSEAPFVPVNCGAIPSELMESEFFGHKKGSFSGAVENKEGLFQAANGGTLFLDEVA
DLPIGMQVKLLRAIQEKAIRAVGDQKEVSVDVRILSATHKNLAELVEAGDFRQDLYYRINVIELDVPKLRERKGDIPLLA
NHILQRIAEECDVHDAKISEEAMKCLENYHFPGNVRELENIIERAFTLCEDDIIEVTDLQLRPANKADNAIDFSDNTIQR
DEETSLEDYLEGIERKTIEQALEETRWNKTAAAKKLGITFRALRYRLKKLDME

Nucleotide

• Length: 1362 bp

>NTDB_id=679130 MY523_RS00150 WP_250656791.1 29516..30877(-) (pilR) [Alkalimarinus coralli strain SCSIO 12582]
ATGACGATTAAAACAGCCCTTATTGTTGATGACGAACCCGATATTCGAGAGCTTCTGGAAATCACCTTGATGAGGATGGG
TATCGACACCTGTACAGCCGAAAACCTGACCAAGGCAAAAGCACTTTTAGAGCAGCATGAGTTCAATCTCTGCCTAACAG
ACATGAACCTTCCTGACGGCAACGGCATCGACCTGGTGTGCCATATACAGCAGTTTTATCCTCAGATACCTGTTGCGGTC
ATTACAGCATACGGCAGCGTGGAAACCGCAATATCATCCTTAAAATCAGGGGCGTTTGACTTTGTATCAAAGCCAGTAGA
CCTTGCCCGATTAAGAGAACTGGTTAGTTCAGCGCTAAAACTGACCGAAGAGAAAAAGGCTAGCAAAGAGATTGTCGAGA
CCGGAAACCTCTTGCTCGGCGAGTCTCCTGAAATGGAGCGATTGAGAAAACAGATCCGCAAGCTGGCGCGTAGTCAGGCC
CCAGTCTATATCAGCGGCGAGTCAGGCAGTGGCAAGGAGTTGGTTGCACGCATGATGCACCTGCAGGGGCCGCGCTCTGA
AGCTCCGTTCGTCCCGGTGAACTGTGGAGCCATTCCCAGCGAGCTAATGGAAAGCGAGTTTTTTGGGCATAAAAAAGGGA
GCTTTAGCGGTGCTGTAGAAAACAAAGAAGGCCTCTTTCAAGCGGCGAATGGAGGCACACTATTTCTCGATGAAGTCGCC
GACTTGCCGATTGGTATGCAGGTAAAACTGCTTAGGGCAATACAGGAAAAAGCGATACGTGCAGTTGGCGATCAGAAAGA
AGTCTCCGTCGATGTCAGGATACTCAGCGCCACGCACAAAAATTTGGCCGAGCTTGTTGAAGCAGGAGATTTCCGGCAAG
ACCTTTACTATAGAATCAACGTCATTGAACTTGATGTCCCAAAACTAAGAGAGCGCAAAGGAGATATCCCCCTACTTGCC
AACCATATTCTGCAACGAATTGCTGAAGAGTGTGACGTACATGATGCAAAGATTAGTGAAGAGGCGATGAAATGCCTAGA
AAACTATCACTTCCCAGGCAACGTACGCGAGCTCGAAAACATCATTGAGCGGGCCTTTACCCTATGCGAAGATGACATTA
TAGAAGTGACCGACCTTCAGCTTCGCCCTGCAAATAAAGCCGACAATGCAATCGACTTTTCGGACAATACGATACAAAGA
GACGAAGAAACCTCTTTGGAGGATTACCTCGAAGGCATTGAAAGAAAAACGATCGAACAGGCTTTAGAAGAGACACGCTG
GAACAAAACCGCCGCAGCCAAAAAGCTTGGCATTACATTTCGCGCCCTGCGTTACCGCTTAAAGAAGTTAGATATGGAGT
AG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	67.253	100	0.675
pilR	Acinetobacter baumannii strain A118	50.873	100	0.514