Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   OG571_RS37530 Genome accession   NZ_CP109575
Coordinates   8427686..8428045 (+) Length   119 a.a.
NCBI ID   WP_405852038.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01369     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8422686..8433045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG571_RS37500 (OG571_37420) - 8422790..8423776 (+) 987 WP_266686940.1 zinc-binding dehydrogenase -
  OG571_RS37505 (OG571_37425) - 8423931..8424362 (-) 432 WP_266686939.1 hypothetical protein -
  OG571_RS37510 (OG571_37430) - 8424639..8426084 (+) 1446 WP_323180349.1 serine/threonine-protein kinase -
  OG571_RS37515 (OG571_37435) - 8426168..8426704 (+) 537 WP_266686937.1 hypothetical protein -
  OG571_RS37520 (OG571_37440) - 8427090..8427299 (+) 210 WP_266686936.1 AMP-binding protein -
  OG571_RS37525 (OG571_37445) - 8427444..8427689 (+) 246 WP_266686935.1 hypothetical protein -
  OG571_RS37530 (OG571_37450) micB 8427686..8428045 (+) 360 WP_405852038.1 sensor histidine kinase Regulator
  OG571_RS37535 (OG571_37455) - 8428055..8428513 (+) 459 WP_266686934.1 NUDIX hydrolase -
  OG571_RS37540 (OG571_37460) - 8428573..8428677 (+) 105 Protein_7419 transcriptional regulator -
  OG571_RS37545 (OG571_37465) - 8428674..8429060 (+) 387 WP_124720386.1 VOC family protein -
  OG571_RS37550 (OG571_37470) - 8429095..8430216 (+) 1122 WP_266686933.1 IS630 family transposase -
  OG571_RS37555 (OG571_37475) - 8430269..8431469 (+) 1201 Protein_7422 IS701 family transposase -
  OG571_RS37560 (OG571_37480) - 8431618..8432967 (-) 1350 WP_266686931.1 IS630 family transposase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12874.56 Da        Isoelectric Point: 9.4596

>NTDB_id=679051 OG571_RS37530 WP_405852038.1 8427686..8428045(+) (micB) [Streptomyces sp. NBC_01369]
MSGDEDALARVVRNLLDNALRHAATRIDVSLRTLHGTARLVVADDGPGIPGADRERVFDRFTRLDDARARDTGGSGLGLA
IVRDIVVAHHGSTHIEDNRPGTRLIVVLPVEGRIARVSR

Nucleotide


Download         Length: 360 bp        

>NTDB_id=679051 OG571_RS37530 WP_405852038.1 8427686..8428045(+) (micB) [Streptomyces sp. NBC_01369]
GTGAGCGGCGACGAGGACGCCCTCGCCCGTGTTGTGCGCAACCTCCTGGACAACGCGCTGCGCCATGCCGCGACCCGCAT
CGACGTCAGCCTCCGTACCCTGCACGGCACCGCACGACTGGTCGTCGCCGACGACGGCCCCGGCATCCCCGGGGCGGACC
GGGAGCGCGTCTTCGACCGGTTCACCCGCCTGGACGACGCCCGCGCCCGGGACACCGGCGGCAGCGGGCTCGGCCTCGCC
ATCGTCCGCGACATCGTCGTGGCCCACCACGGCAGCACCCACATCGAGGACAACCGGCCGGGCACCCGGCTGATCGTCGT
GCTGCCGGTCGAGGGACGGATCGCGCGGGTGTCCCGGTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

37.719

95.798

0.361