Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   MYA84_RS00800 Genome accession   NZ_CP095872
Coordinates   169372..170526 (-) Length   384 a.a.
NCBI ID   WP_184105167.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164372..175526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS00770 (MYA84_00765) - 164861..165241 (-) 381 WP_004814264.1 RcnB family protein -
  MYA84_RS00775 (MYA84_00770) - 165455..166000 (-) 546 WP_004814265.1 glutathione peroxidase -
  MYA84_RS00780 (MYA84_00775) - 166224..167123 (+) 900 WP_004814267.1 DMT family transporter -
  MYA84_RS00785 (MYA84_00780) - 167068..167358 (-) 291 WP_004814269.1 hypothetical protein -
  MYA84_RS00790 (MYA84_00785) - 167530..168099 (-) 570 WP_004814272.1 Sua5/YciO/YrdC/YwlC family protein -
  MYA84_RS00795 (MYA84_00790) dprA 168140..169279 (-) 1140 WP_184105165.1 DNA-processing protein DprA Machinery gene
  MYA84_RS00800 (MYA84_00795) tsaP 169372..170526 (-) 1155 WP_184105167.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MYA84_RS00805 (MYA84_00800) def 170647..171177 (+) 531 WP_004814278.1 peptide deformylase -
  MYA84_RS00810 (MYA84_00805) - 171270..171689 (+) 420 WP_004814280.1 DUF2946 family protein -
  MYA84_RS00815 (MYA84_00810) - 171761..173782 (+) 2022 WP_184105169.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42118.35 Da        Isoelectric Point: 9.0719

>NTDB_id=678929 MYA84_RS00800 WP_184105167.1 169372..170526(-) (tsaP) [Acinetobacter schindleri strain H4-3-C1]
MKKVLKGMPSFSALGIKNQMLALAVCVSVGMGTISTTHAAPARNVNPPSLKASAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWAGNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCAGIINRYLGTNKLQPQVRIESLNNTIPVIPLAHIQQWLE
RYTIMAADSIEGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYILTDANGKKYTAALELQQVASGIAVR
GEGDITTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPVNAENNISGGQIIRVLGSIGTAARHSVVTIDRGIAHGVQSGH
VFSVNQQGEVVTDPKTKERVQLPGERIGNVMVFKTFDQFSYAYVLDSELPIKVGATIQPPLLDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=678929 MYA84_RS00800 WP_184105167.1 169372..170526(-) (tsaP) [Acinetobacter schindleri strain H4-3-C1]
ATGAAAAAGGTTTTGAAGGGCATGCCATCTTTTAGTGCCTTGGGGATTAAAAATCAAATGCTCGCACTTGCAGTTTGTGT
GAGTGTTGGTATGGGGACAATTTCAACTACACATGCAGCACCAGCTCGTAATGTCAATCCACCAAGCCTGAAAGCATCAG
CACCGAATGTCTATGTGGTAAAAAAAGGTGACACATTATGGGATATTTCCAAGCGTTTTCTTAAAAATCCGGTACGCTGG
CCAGAAATCTGGGCAGGTAATAAGCATGTGAAGAATCCACACTGGATTTTTCCAGGTGACCGTCTGCTGATGTGCGATTA
CCAGGGCCGCCCAATCATTGGTAAAGATGAAGGTGATGGCTGTGCCGGTATTATCAACCGCTACCTTGGCACGAATAAGT
TACAGCCTCAGGTGCGTATCGAATCGCTCAACAATACTATTCCTGTTATTCCTTTAGCCCATATCCAGCAATGGCTAGAG
CGCTATACAATTATGGCAGCAGACTCTATTGAAGGCACTCCTTATATTCTGGGTACAGCTGATCAACGTGTACTGGCTGG
TAAAGGCCAGAAAGTTTATGCACGTGGCAATGGCCTGGAAGTGGGTCAACGCTATGCAGTATACCGCGAAGCTGAACCTT
ATATACTGACTGATGCCAATGGTAAAAAATACACCGCTGCCCTAGAACTGCAACAGGTTGCTTCTGGTATCGCAGTCCGT
GGTGAAGGTGATATCACCACACTGGAACTGACCGATAGCTATAATGCTGAAGTCCGTCGTGGTGACCGGGTACTACCAGA
ATATGATCCAATGCTGCCTACCCTGTTCTATCCAGTAAATGCGGAAAACAACATTTCAGGTGGTCAGATCATTCGTGTAT
TGGGTTCAATTGGTACAGCTGCACGTCATAGTGTTGTCACCATTGACCGTGGCATAGCACATGGCGTTCAGTCTGGTCAT
GTGTTTAGTGTGAATCAGCAAGGTGAAGTCGTGACTGATCCAAAAACCAAAGAGCGTGTGCAGCTTCCGGGCGAACGTAT
TGGTAATGTCATGGTCTTCAAAACGTTTGATCAGTTCAGCTATGCCTATGTCCTAGACAGTGAATTGCCGATCAAAGTGG
GCGCTACCATTCAGCCACCGCTGCTGGACGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.052

100

0.682