Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG512_RS24600 Genome accession   NZ_CP109565
Coordinates   5219257..5220381 (+) Length   374 a.a.
NCBI ID   WP_266562284.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5214257..5225381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS24590 (OG512_24480) dnaN 5217013..5218143 (+) 1131 WP_116512073.1 DNA polymerase III subunit beta -
  OG512_RS24595 (OG512_24485) gnd 5218290..5219165 (+) 876 WP_266562286.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG512_RS24600 (OG512_24490) recF 5219257..5220381 (+) 1125 WP_266562284.1 DNA replication/repair protein RecF Machinery gene
  OG512_RS24605 (OG512_24495) - 5220378..5220920 (+) 543 WP_116512070.1 DUF721 domain-containing protein -
  OG512_RS24610 (OG512_24500) gyrB 5221217..5223289 (+) 2073 WP_355688047.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40936.64 Da        Isoelectric Point: 6.7127

>NTDB_id=678928 OG512_RS24600 WP_266562284.1 5219257..5220381(+) (recF) [Streptomyces sp. NBC_01378]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFDLIAILQPLADKAYEQLAPGGGPLALDYKPSSPEIEG
HAREELYEQLIAALEAARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRYAVSEGTVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=678928 OG512_RS24600 WP_266562284.1 5219257..5220381(+) (recF) [Streptomyces sp. NBC_01378]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGCCCGAACGGGCAGGGCAAGACCAACCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTCATACGTGCCGCGGTCCGGCAGGGTGAGAGACAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCCCGTGA
TGTGCTCGGCATCGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCGCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTCCTCGACGAGCTGATCACGGCCCGCTCCCCGCGCATGGCCGGTGTCCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGCCGGTCCATGGACCTGTCGACTCTCGACGTGTG
GGACCAGCACCTCGCGCGCGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCGACCTGATCGCCATCCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGCCCGCTGGCCCTGGACTACAAGCCGTCCTCGCCCGAAATCGAGGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATAGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTCCTCAAACTCGGCCAGCTGCCGGCGAAGGGATACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCGTACGACCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGCCTCGCCGAGCTGGTCGCCCCCGGTGAGCAGGTCCTGGT
GACGGCCGCGGTGGACGACGACGTGCCGGGCGTCCTGGCGGGCACGCGGTACGCGGTGTCCGAAGGCACGGTGGAGCGGG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361