Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MW889_RS17665 Genome accession   NZ_CP095867
Coordinates   3738045..3739466 (-) Length   473 a.a.
NCBI ID   WP_033846927.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 11J360     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3733045..3744466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW889_RS17650 (MW889_17650) lptG 3734098..3735168 (+) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -
  MW889_RS17655 (MW889_17655) gpmI 3735294..3736841 (+) 1548 WP_022575138.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  MW889_RS17660 (MW889_17660) - 3736857..3738041 (+) 1185 WP_004883636.1 S41 family peptidase -
  MW889_RS17665 (MW889_17665) pilR 3738045..3739466 (-) 1422 WP_033846927.1 sigma-54 dependent transcriptional regulator Regulator
  MW889_RS17670 (MW889_17670) pilS 3739490..3741058 (-) 1569 WP_065286417.1 PAS domain-containing sensor histidine kinase Regulator
  MW889_RS17675 (MW889_17675) - 3741069..3741704 (-) 636 WP_000633799.1 response regulator -
  MW889_RS17680 (MW889_17680) pbpG 3741916..3742962 (+) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  MW889_RS17685 (MW889_17685) thrC 3743071..3744210 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53175.36 Da        Isoelectric Point: 6.6690

>NTDB_id=678895 MW889_RS17665 WP_033846927.1 3738045..3739466(-) (pilR) [Acinetobacter nosocomialis strain 11J360]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
FQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=678895 MW889_RS17665 WP_033846927.1 3738045..3739466(-) (pilR) [Acinetobacter nosocomialis strain 11J360]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACAAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGGGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCTCGTTCT
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAAGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGTGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGCGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCACATTTGCACCCTGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTTCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.715

100

0.947
  pilR Pseudomonas aeruginosa PAK

50.545

97.04

0.49