Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MW889_RS14175 Genome accession   NZ_CP095867
Coordinates   2988598..2989233 (+) Length   211 a.a.
NCBI ID   WP_031982346.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 11J360     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2983598..2994233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW889_RS14160 (MW889_14170) adeT2 2984658..2985644 (-) 987 WP_004711792.1 putative multidrug efflux protein AdeT2 -
  MW889_RS14165 (MW889_14175) - 2985724..2986539 (-) 816 WP_006580703.1 NAD(P)H-binding protein -
  MW889_RS14170 (MW889_14180) recG 2986560..2988605 (+) 2046 WP_004884596.1 ATP-dependent DNA helicase RecG -
  MW889_RS14175 (MW889_14185) comF 2988598..2989233 (+) 636 WP_031982346.1 phosphoribosyltransferase family protein Machinery gene
  MW889_RS14180 (MW889_14190) - 2989236..2989637 (-) 402 WP_033846993.1 NUDIX domain-containing protein -
  MW889_RS14185 (MW889_14195) - 2989652..2990233 (-) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  MW889_RS14190 (MW889_14200) - 2990391..2991404 (+) 1014 WP_002049699.1 CorA family divalent cation transporter -
  MW889_RS14195 (MW889_14205) - 2991479..2991766 (-) 288 WP_000250997.1 STAS domain-containing protein -
  MW889_RS14200 (MW889_14210) - 2991778..2992419 (-) 642 WP_002049753.1 ABC transporter substrate-binding protein -
  MW889_RS14205 (MW889_14215) - 2992446..2993129 (-) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  MW889_RS14210 (MW889_14220) mlaE 2993129..2993905 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24628.85 Da        Isoelectric Point: 9.9089

>NTDB_id=678882 MW889_RS14175 WP_031982346.1 2988598..2989233(+) (comF) [Acinetobacter nosocomialis strain 11J360]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=678882 MW889_RS14175 WP_031982346.1 2988598..2989233(+) (comF) [Acinetobacter nosocomialis strain 11J360]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

96.209

100

0.962
  comF Acinetobacter baumannii D1279779

95.261

100

0.953