Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JLF30_RS17775 Genome accession   NZ_AP022478
Coordinates   3723236..3723841 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain STN0717-11     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3718236..3728841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF30_RS17755 (STN0717ESC11_34320) aes 3718377..3719336 (+) 960 WP_000801809.1 acetyl esterase -
  JLF30_RS17760 (STN0717ESC11_34330) hemH 3719333..3720295 (-) 963 WP_001250117.1 ferrochelatase -
  JLF30_RS17765 (STN0717ESC11_34340) adk 3720427..3721071 (-) 645 WP_001220233.1 adenylate kinase -
  JLF30_RS17770 (STN0717ESC11_34350) htpG 3721252..3723126 (-) 1875 WP_000678202.1 molecular chaperone HtpG -
  JLF30_RS17775 (STN0717ESC11_34360) recR 3723236..3723841 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  JLF30_RS17780 (STN0717ESC11_34370) ybaB 3723841..3724170 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  JLF30_RS17785 (STN0717ESC11_34380) dnaX 3724223..3726154 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  JLF30_RS17790 (STN0717ESC11_34390) apt 3726283..3726834 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  JLF30_RS17795 (STN0717ESC11_34400) ybaN 3726987..3727364 (-) 378 WP_001188905.1 DUF454 family protein -
  JLF30_RS17800 (STN0717ESC11_34410) priC 3727434..3727961 (+) 528 WP_000844856.1 primosomal replication protein N'' -
  JLF30_RS17805 (STN0717ESC11_34420) rsmS 3727975..3728136 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=67863 JLF30_RS17775 WP_001195025.1 3723236..3723841(-) (recR) [Escherichia coli strain STN0717-11]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=67863 JLF30_RS17775 WP_001195025.1 3723236..3723841(-) (recR) [Escherichia coli strain STN0717-11]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment