Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ATE38_RS05790 Genome accession   NZ_AP017377
Coordinates   1147555..1148241 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain OC8     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1142555..1153241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS05755 yqeH 1143082..1144182 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  ATE38_RS05760 aroE 1144196..1145002 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  ATE38_RS05765 yhbY 1145006..1145296 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  ATE38_RS05770 nadD 1145299..1145868 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ATE38_RS05775 yqeK 1145858..1146442 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ATE38_RS05780 rsfS 1146443..1146796 (+) 354 WP_001088022.1 ribosome silencing factor -
  ATE38_RS05785 - 1146799..1147515 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  ATE38_RS05790 comEA 1147555..1148241 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  ATE38_RS05795 - 1148333..1148794 (+) 462 WP_000439693.1 ComE operon protein 2 -
  ATE38_RS05800 comEC 1148799..1151000 (+) 2202 WP_001566051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ATE38_RS05805 holA 1151057..1152031 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  ATE38_RS05810 rpsT 1152076..1152327 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=67863 ATE38_RS05790 WP_001792568.1 1147555..1148241(+) (comEA) [Staphylococcus aureus strain OC8]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=67863 ATE38_RS05790 WP_001792568.1 1147555..1148241(+) (comEA) [Staphylococcus aureus strain OC8]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment