Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ATE38_RS02795 Genome accession   NZ_AP017377
Coordinates   568810..569379 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain OC8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 563810..574379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE38_RS02770 cysE 565023..565670 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ATE38_RS02775 cysS 565654..567054 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  ATE38_RS02780 - 567047..567451 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ATE38_RS02785 rlmB 567459..568205 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ATE38_RS02790 - 568205..568729 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ATE38_RS02795 sigH 568810..569379 (+) 570 WP_000872873.1 RNA polymerase sigma factor Regulator
  ATE38_RS02800 rpmG 569494..569637 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ATE38_RS02805 secE 569693..569875 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  ATE38_RS02810 nusG 569888..570436 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ATE38_RS02815 rplK 570617..571039 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ATE38_RS02820 rplA 571247..571939 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ATE38_RS02830 rplJ 572211..572711 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ATE38_RS02835 rplL 572754..573122 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ATE38_RS02840 - 573297..573905 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=67854 ATE38_RS02795 WP_000872873.1 568810..569379(+) (sigH) [Staphylococcus aureus strain OC8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=67854 ATE38_RS02795 WP_000872873.1 568810..569379(+) (sigH) [Staphylococcus aureus strain OC8]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment