Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG741_RS22735 Genome accession   NZ_CP109530
Coordinates   4935801..4937234 (-) Length   477 a.a.
NCBI ID   WP_405600667.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4930801..4942234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS22710 (OG741_22680) - 4931100..4931771 (-) 672 WP_405600661.1 hypothetical protein -
  OG741_RS22715 (OG741_22685) - 4931759..4932331 (-) 573 WP_266481599.1 SigE family RNA polymerase sigma factor -
  OG741_RS22720 (OG741_22690) - 4932584..4933501 (-) 918 WP_405605718.1 A/G-specific adenine glycosylase -
  OG741_RS22725 (OG741_22695) - 4933675..4934484 (+) 810 WP_405600663.1 hypothetical protein -
  OG741_RS22730 (OG741_22700) disA 4934575..4935699 (-) 1125 WP_405600665.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG741_RS22735 (OG741_22705) radA/sms 4935801..4937234 (-) 1434 WP_405600667.1 DNA repair protein RadA Machinery gene
  OG741_RS22740 (OG741_22710) - 4937417..4939144 (+) 1728 WP_405600669.1 BACON domain-containing protein -
  OG741_RS22745 (OG741_22715) - 4939427..4940290 (-) 864 WP_405600670.1 hypothetical protein -
  OG741_RS22750 (OG741_22720) - 4940331..4941263 (+) 933 WP_405600672.1 Ppx/GppA family phosphatase -
  OG741_RS22755 (OG741_22725) - 4941287..4942117 (+) 831 WP_266479607.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 50163.21 Da        Isoelectric Point: 8.2604

>NTDB_id=678341 OG741_RS22735 WP_405600667.1 4935801..4937234(-) (radA/sms) [Streptomyces sp. NBC_01410]
MAARTKSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTGEESASQVRLRADRINALHDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPAGMKVTEVADMGDALRVLPRGRRTAPDNSAERRSDRASERGQ

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=678341 OG741_RS22735 WP_405600667.1 4935801..4937234(-) (radA/sms) [Streptomyces sp. NBC_01410]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCTGAATGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCACCCGCTGTCCGTACGACCGCCGCCGGGC
GCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTCGACGGCAGGCAGGCGACCGCCCGCTCCACCGGTGTGGCCGAGCTG
GACCGCGTCCTCGGCGGCGGCCTCGTGCCGGGAGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTCCTCGACGTCGCCGCCAAGGCCGCGAGCGACGACCACCGCACGCTGTATGTCACCGGCGAGGAGTCCGCGAGCCAGG
TCCGCCTGCGAGCCGACCGGATCAACGCGCTGCACGACCACCTGTATCTCGCCGCCGAGACCGATCTCTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCCTCGCTGCTGGTCCTCGACTCCGTACAGACCGTCGCATCGCCCGAGATCGACGGTGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCACTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTCCTCGAGCACCTGGTGGACGTCGTGCTGTCCTTC
GAGGGCGACCGGCACGCCCGCCTCCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTCACCCGCCGCGCGGAAGCCGTCCCCG
GCACCTGCCTGACGGTCACCCTCGAAGGCCGCCGCCCTCTCGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACGACCTCGGGCCTGGAGACCTCACGGGTGTCGATGATGCTGGCCGTACTGGAACAGCGCGGCCG
GATCACCGCGCTCGGCAAACGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCGGCGGACCTCG
CGATCGCGCTCGCCCTGGCGTCGGCGGCCAGCGACACCCCGCTGCCCAAGAATCTGGTCGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGAAGGGTGACGGGCGTCCAGCGAAGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCATGCCCTTGT
CCCCACCGATCCGGGCAAGATCCCTGCGGGTATGAAGGTCACGGAAGTGGCCGACATGGGGGACGCTCTCAGGGTGCTCC
CGCGCGGTCGCCGGACGGCTCCCGACAACAGTGCCGAAAGGCGCTCCGACAGGGCTTCCGAAAGGGGTCAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

94.969

0.419
  radA Streptococcus pneumoniae Rx1

42.478

94.759

0.403
  radA Streptococcus pneumoniae D39

42.478

94.759

0.403
  radA Streptococcus pneumoniae R6

42.478

94.759

0.403
  radA Streptococcus pneumoniae TIGR4

42.478

94.759

0.403
  radA Streptococcus mitis SK321

43.925

89.727

0.394
  radA Streptococcus mitis NCTC 12261

43.925

89.727

0.394