Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG290_RS10155 Genome accession   NZ_CP109506
Coordinates   2320029..2321072 (-) Length   347 a.a.
NCBI ID   WP_329025017.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01423     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2315029..2326072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG290_RS10145 (OG290_10175) rcrP 2316319..2318052 (+) 1734 WP_093708928.1 ABC transporter ATP-binding protein Regulator
  OG290_RS10150 (OG290_10180) - 2318052..2319983 (+) 1932 WP_329025015.1 ABC transporter ATP-binding protein -
  OG290_RS10155 (OG290_10185) rpoS 2320029..2321072 (-) 1044 WP_329025017.1 RNA polymerase sigma factor Regulator
  OG290_RS10160 (OG290_10190) dnaG 2321237..2323147 (-) 1911 WP_329025019.1 DNA primase -
  OG290_RS10165 (OG290_10195) - 2323254..2324513 (-) 1260 WP_329025021.1 FAD-dependent oxidoreductase -
  OG290_RS10170 (OG290_10200) - 2324602..2325945 (-) 1344 WP_329025023.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39199.76 Da        Isoelectric Point: 5.5719

>NTDB_id=678017 OG290_RS10155 WP_329025017.1 2320029..2321072(-) (rpoS) [Streptomyces sp. NBC_01423]
MQTRTVTEAERAPAVPVQAMATDHPEGVMEEPDEPPEPRGRPETGPTSDLFRQYLREIGRIPLLTAAEEVELARCVEAGL
FAEERLARTPDPDTRLAVDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGY
KFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLTPERVGEILRLAQEPI
SLHAPVGEEEDVSLGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERRVVQLRYGLVDGRPRTLEEIGRIFGVTRE
RIRQIESKTLGRLRDHTSADQLRGYLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=678017 OG290_RS10155 WP_329025017.1 2320029..2321072(-) (rpoS) [Streptomyces sp. NBC_01423]
GTGCAGACCCGGACCGTGACCGAAGCCGAGCGCGCCCCCGCCGTCCCCGTGCAGGCCATGGCGACGGACCACCCCGAGGG
GGTCATGGAGGAGCCGGACGAGCCCCCGGAGCCGCGCGGGAGACCGGAGACCGGGCCCACATCGGACCTGTTCCGCCAGT
ACCTGCGCGAGATCGGCCGCATCCCGCTGCTCACCGCCGCCGAGGAGGTGGAGCTCGCCCGGTGCGTCGAGGCCGGCCTG
TTCGCCGAGGAACGCCTCGCCCGCACCCCGGACCCCGACACCCGCCTCGCCGTCGACCTGGACCGCCTCGTCGTCATGGG
CCGCACGGCCAAGCGCCGCCTCATCGAGGCCAACCTCCGGCTCGTGGTCTCCGTCGCCAAACGCTACGTCGGCCGCGGCC
TGACCATGCTGGACCTCGTCCAGGAGGGGAACCTCGGGCTGATCCGGGCCGTCGAGAAGTTCGACTACGCCCGCGGCTAC
AAGTTCTCCACGTACGCGACCTGGTGGATCCGCCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGGACCATAAGGGT
CCCGGTCCACGTCGTCGAGCTGATCAACCGCGTCGTCCGGGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAACCCA
CGCCCGAGGAGGTCGCCGCCCACCTCGACCTGACGCCCGAACGGGTCGGCGAGATCCTGCGCCTCGCCCAGGAACCCATC
TCGCTGCACGCCCCGGTCGGCGAGGAGGAGGACGTCTCGCTCGGCGACCTCATCGAGGACGGCGACGCCGCGTCCCCCGT
GGAGTCCGCGGCGTTCCTGCTGCTGCGCCAGCACCTGGAGGCGGTCCTCTCCACCCTGGGCGAGCGCGAACGCAGGGTGG
TCCAGCTGCGCTACGGACTGGTCGACGGACGGCCCCGCACGCTGGAGGAGATCGGCCGCATCTTCGGCGTGACCCGCGAA
CGCATCCGCCAGATCGAGTCCAAGACCCTCGGCCGACTGCGCGACCACACCTCCGCCGACCAGCTCCGCGGCTACCTCGA
CTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(193-269)

Sigma-70, region 4 (Sigma70_r4)

(282-334)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.493

84.15

0.366