Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG290_RS10145 Genome accession   NZ_CP109506
Coordinates   2316319..2318052 (+) Length   577 a.a.
NCBI ID   WP_093708928.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01423     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2311319..2323052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG290_RS10115 (OG290_10145) - 2312572..2313390 (-) 819 WP_329025011.1 hypothetical protein -
  OG290_RS10135 (OG290_10165) - 2314363..2314668 (+) 306 WP_018518286.1 hypothetical protein -
  OG290_RS10140 (OG290_10170) - 2314738..2316183 (+) 1446 WP_329025013.1 FGGY family carbohydrate kinase -
  OG290_RS10145 (OG290_10175) rcrP 2316319..2318052 (+) 1734 WP_093708928.1 ABC transporter ATP-binding protein Regulator
  OG290_RS10150 (OG290_10180) - 2318052..2319983 (+) 1932 WP_329025015.1 ABC transporter ATP-binding protein -
  OG290_RS10155 (OG290_10185) rpoS 2320029..2321072 (-) 1044 WP_329025017.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62693.73 Da        Isoelectric Point: 5.2547

>NTDB_id=678016 OG290_RS10145 WP_093708928.1 2316319..2318052(+) (rcrP) [Streptomyces sp. NBC_01423]
MLIKILRAYLGPYKKPIAVLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYILQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSSREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVAVSLIVRKMRPLFRQMQKRLDTVNRVLREQITGNRVIRAFVRDDYEEGRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLETESSVVP
PVEPVRELRAHGHLEVRGADFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=678016 OG290_RS10145 WP_093708928.1 2316319..2318052(+) (rcrP) [Streptomyces sp. NBC_01423]
GTGCTCATAAAAATTCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGGTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACCCTCTACCTGCCGACCCTCAACGCCGACATCATCGACAACGGTGTCGTCCAGGGGGACACGGGCTACA
TCCTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGTGCC
CGTACCGCCTCCGCGCTCGGGCGGGACGTGCGGGCGTCGGTCTTCGACCGGGTGCAGTCGTTCTCCTCGCGCGAGGTCGG
GCGGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATACAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTCTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGGGTCGCGGTCAGCCTGATCGTGCGGAAGATGCGCCCGCTGTTCCGGCAGATGCA
GAAGCGGCTCGACACGGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGGGGCGCTTCCGGGGCGCCAACACCGAACTGACGGACGTGGCGCTGTCGACGGGCCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCGGAGCGCGTCCAGGAGGTCCTGGAGACCGAGTCCAGCGTCGTCCCG
CCGGTGGAACCGGTGCGGGAGCTGCGCGCCCACGGGCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTGGACCTGGTGGCGCGGCCGGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGTACGGACGTGCGG
ACCCTGGACCCGGTGTTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCGAAGGAGTTCG
TCGAGGCCCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGGCTG
TCGATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GGGAGGCCGACCGGATCATCGTGCTGGACGAGGGGCGGGTCGTCGGGACCGGCACCCATCACGAGCTGATGGACGGCAAT
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.7

94.107

0.383